Gene Details:

• Gene ID: PGSC0003DMP400015514
• Gene Name: LOC102603115
• Gene Family: MYB Family
• Description: MYB Family protein
• Species: Solanum tuberosum
• Source: MYB family gene from PlantTFDB

Protein Features:

• Gene3D:  G3DSA:1.10.10.60
• PROSITE profile:  PS51294
• SuperFamily:  SSF46689
• SMART:  SM00717
• Pfam:  PF00249
• InterPro:  IPR009057    IPR017930    IPR001005

Annotation Proteins:

• Refseq:  XP_006341023.1  — PREDICTED: transcription factor AS1
• Refseq:  XP_015161455.1  — PREDICTED: transcription factor AS1
• Swissprot:  O80931  — AS1_ARATH; Transcription factor AS1
• TrEMBL:  M1AH77  — M1AH77_SOLTU; Uncharacterized protein
• STRING:  PGSC0003DMT400022771  — (Solanum tuberosum)

Gene Ontology:

• GO:0008356  — Biological Process — asymmetric cell division
• GO:0009615  — Biological Process — response to virus
• GO:0009651  — Biological Process — response to salt stress
• GO:0009733  — Biological Process — response to auxin
• GO:0009739  — Biological Process — response to gibberellin
• GO:0009751  — Biological Process — response to salicylic acid
• GO:0009753  — Biological Process — response to jasmonic acid
• GO:0009944  — Biological Process — polarity specification of adaxial/abaxial axis
• GO:0010338  — Biological Process — leaf formation
• GO:0042742  — Biological Process — defense response to bacterium
• GO:0045088  — Biological Process — regulation of innate immune response
• GO:0045892  — Biological Process — negative regulation of transcription, DNA-templated
• GO:0046686  — Biological Process — response to cadmium ion
• GO:0050832  — Biological Process — defense response to fungus
• GO:0000793  — Cellular Component — condensed chromosome
• GO:0005730  — Cellular Component — nucleolus
• GO:0003677  — Molecular Function — DNA binding
• GO:0042803  — Molecular Function — protein homodimerization activity

Family Introduction:

• MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
• In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.

Literature:

• The R2R3-MYB gene family in Arabidopsis thaliana.   DOI:  10.1016/s1369-5266(00)00199-0 ;  PMID:  11597504

Sequences: