Information report for PDK_30s1023091g001
Gene Details
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Functional Annotation
- Refseq: XP_008793426.1 — uncharacterized protein LOC103709716 isoform X1
- Refseq: XP_017698885.1 — uncharacterized protein LOC103709716 isoform X2
- Refseq: XP_017698886.1 — uncharacterized protein LOC103709716 isoform X3
- TrEMBL: A0A2H3Y4R5 — A0A2H3Y4R5_PHODC; uncharacterized protein LOC103709716 isoform X1
- TrEMBL: A0A2H3ZR43 — A0A2H3ZR43_PHODC; uncharacterized protein LOC103709716 isoform X2
- TrEMBL: A0A2H3ZRW3 — A0A2H3ZRW3_PHODC; uncharacterized protein LOC103709716 isoform X3
- STRING: XP_008793426.1 — (Phoenix dactylifera)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: Bradi2g38160.1.p
- Musa acuminata: GSMUA_Achr6P32970_001, GSMUA_Achr9P04400_001
- Setaria italica: Seita.3G048100.2.p, Seita.3G048100.1.p
- Setaria viridis: Sevir.3G048600.8.p, Sevir.3G048600.7.p, Sevir.3G048600.4.p, Sevir.3G048600.1.p, Sevir.3G048600.3.p, Sevir.3G048600.2.p
Sequences
CDS Sequence:
- >PDK_30s1023091g001|Phoenix_dactylifera|MYB|PDK_30s1023091g001
ATGCCAGCTCTAATTTTTGATGAGAAGGAGAGGAAACAGACAAAGTTTATCACAAGTAATAGACTGATAGAAGACCCAATCTCTTTTGAGAAGGAACGAGCAATGATAAACCCATGGACGCAAGAAGAAAAGGAAGTCTTCATGGAGATGCTTGCCACATTTGGTAAAGATTTTACGAAGATTTCTTCTTTTTTTAGCCACAAAACGACGGCAGACTGCATTGAGTTTTATTACAAGAACCATAAGTCTGAAAGTTTCAAAGAAGTAAAGAAACGGTTGGATCTTAAAAAGCAGTGGCAGTGCTTGCCTACCAGCAATTATCTTGTAACATCAGGAAAGAAGTGGAATCGTGGAATAAATGCTGCTTCACTAGATATGCTTGGGGCAGCATCGATGGTAGCAGCACACAGCAGTGGTAATGCAAAGAGCCAACAAAGGTATGCTGGAAGGTCCATTCATGGAACCTATAATGGCCTGAAAGTGCCTTGCGGGAATTATAGGTCATTGGAAACGGTAAGCAGTGTTGAAATACCAGGGCATGAGAGAGAAACTGTAGCTGCTGATGTTTTAGCGGGCATGTGTGGCGCTCTATCCTCTGAAGCAATGAGCTCTTGTGTTACTAGTTCTATCGACCCTGTCGAGAAGATGAGCTTCATGGCAGTGGAGCGACCCTTGACACTAGAAGTTACCCAAATTTTTGATGAGGGCACTTGTTCAAATGAAGGCTGTGGTGACTTGGACTCGTTTGATTGGACTGATGAGGAGAAGTCCATGTTTATCCGAGCTTTGAGCATGTATGGCAAAGATTTTGCAAGGATCTCACGGCGTGTAGGGACAAGATCAAGGGAGCAATGCAAGATCTTCTTTAGTAAAGCTAGAAAATGTCTTGGCCTAGATGTGATCCACCAAGGAATTAGCAATGGGGGAATGCCAATGGGTGATGCCAATGGAGGAAGGGGTGATGCCGATGATGCTTGTGCTGCTGAGATGGATTCTGCAATTTGCAGTATGCAGTCTTGTTCTAAAATGGATGCAGATGTGTGCCAGTCTGTGGCCAAGATTAACAGTGAAGGGTGGGTTAATGCTGCCATGACTCCCCTGCAGGCTGAAACTGATAGAACAAGCGAGCAGGGTGTCGTGGGAGGAATAAATCTGGAGGAAGAGGGGAAGGTTGATAAGCATGTGTCTGTTCTTCCTGAGAATAAGCTGGTAAGTGAAGGGGACAATCCTCAGTCTGTTTTTACTTTGAAGAAAAATGCTGATGCTGCAATAAGATCTAATGAATCTGTACAGCTTCATGAAGCTGTAGAGTGTGTTCATGCAGCAATGAAGATTGGGGGAAGTATGGTCTCTCCAGTTGAACCTGCCTTTACAGCATGTATGGAAGTCGAGTCCAAAGCTCACATTGATGATGTGGTCCAGCAAAAAGGTAATGGCGGAAAATTTTCTGCAGATGTGATGAAAAAGGAAGTAGATGTGCCATTGCTGGTGCCTGAGACTGAGTCATGTAATAAACAGCAGATGGATATAGACTTAATTAATGGTGGCAAAATTTGCTCTGCAAGCAATTCTAAGGTTGATCTAAATTCTCTGCTCCCAGGAAAGAAAGTTGATGATTGCCCCAGGTCCACATTTGCCCCCGATTGCCAGCATCAGATACACCTGGATCTGCTCCGGTGTCTACAGAAAATACCTCAGGGCATCTCATTGAAGCAGGAGAATCCCGACTCTTTACTGTTGAACTCAGTGTTGCCTGATCCATCTTCTATTTGTTTTGAGGGCCCTCATCTTGTAGCTTCCCAGGCTATGAATTTTGAGGAGCATGGGAACAAGCAGCATCTGAATCCAGCAGCCAGAGATCTTTACCAGCAGTATATGTTAAGAAATCCATTTCTGCATCTGGTTGACCAGCCCTTGCATGTTCTCAGAGGCTATCCGCTGCAGGTCAAAAATCAGGAGGTGAAGAGAGAAGCGGATCCTCTGATTGGTGAAAAACCAGTTTTAATAGAAAGCCATCCCAAGAAAAATGGGGTTTCCCAGTCAAATCAGTTCTTTACTTCAGAGATGCATGGCGACCATTGCTATCGTTCCAGCCTTTCACGTTCGAGGCCAGGGGTACTGTTTCCCCTGAGGAGTGAGGCCCAACCAGAAGCTCAGTTAAGACATTGCTCCCAGAATGCTTGCTCTGAGCCTGAAGAGCAAACGCACCAAGCTAGTGATGTCAAACTGTTTGGGCAAATTATCTGTCATCCGTCATCCTCACAAAAATCAAATTCTTCCCCGCATGAATGCAATAGTAAGCCCTCCTCACCGAGAATTAATAGGTCTTCAACTGGGAAACCATCTAATGCTGTAAAAGCTGGCATGCCTTTTGCTTCCACACCTGGAAATAGTGGTCATGTGGGTCTGGAGGAGCTGCCTGTAAGAAGTTATGGCTTCTGTGACGGGAATAGACTACAGAGTGGATTCTCATCCTTGCCAGAATCTGCTGTCATGTTGGCGAAGTATCATGGATCACTGGCTGGAATGTCATTTTACACTGCCAAAGATAGTGTTCCTAGCAGCAACGGGATTTTAGCACAGCAGTCTTACATGCAGCACTTGGCATCAGATGGAAAGCGGCTTGAAAGCTTCTGTGAGCTGCAGAAGAGGAACGGGATTGAAATGGTTTCAGGGTTCCAGCAGCAAGGGAGGGTTGCAAGGTTAGGAGCAAACATGGTGGGGGGAGGAATACTTGGCAGTGGAGGGGTGTCAGACCCTGTGGCGGCCTTAAAAATGCATTATGCTGCAAGGGCCAATGTCCTTAGCGGTGAAATGGAGTCATGGAGAGGAGATATAGGAGGGAGATAG
Protein Sequence:
- >PDK_30s1023091g001|Phoenix_dactylifera|MYB|PDK_30s1023091g001
MPALIFDEKERKQTKFITSNRLIEDPISFEKERAMINPWTQEEKEVFMEMLATFGKDFTKISSFFSHKTTADCIEFYYKNHKSESFKEVKKRLDLKKQWQCLPTSNYLVTSGKKWNRGINAASLDMLGAASMVAAHSSGNAKSQQRYAGRSIHGTYNGLKVPCGNYRSLETVSSVEIPGHERETVAADVLAGMCGALSSEAMSSCVTSSIDPVEKMSFMAVERPLTLEVTQIFDEGTCSNEGCGDLDSFDWTDEEKSMFIRALSMYGKDFARISRRVGTRSREQCKIFFSKARKCLGLDVIHQGISNGGMPMGDANGGRGDADDACAAEMDSAICSMQSCSKMDADVCQSVAKINSEGWVNAAMTPLQAETDRTSEQGVVGGINLEEEGKVDKHVSVLPENKLVSEGDNPQSVFTLKKNADAAIRSNESVQLHEAVECVHAAMKIGGSMVSPVEPAFTACMEVESKAHIDDVVQQKGNGGKFSADVMKKEVDVPLLVPETESCNKQQMDIDLINGGKICSASNSKVDLNSLLPGKKVDDCPRSTFAPDCQHQIHLDLLRCLQKIPQGISLKQENPDSLLLNSVLPDPSSICFEGPHLVASQAMNFEEHGNKQHLNPAARDLYQQYMLRNPFLHLVDQPLHVLRGYPLQVKNQEVKREADPLIGEKPVLIESHPKKNGVSQSNQFFTSEMHGDHCYRSSLSRSRPGVLFPLRSEAQPEAQLRHCSQNACSEPEEQTHQASDVKLFGQIICHPSSSQKSNSSPHECNSKPSSPRINRSSTGKPSNAVKAGMPFASTPGNSGHVGLEELPVRSYGFCDGNRLQSGFSSLPESAVMLAKYHGSLAGMSFYTAKDSVPSSNGILAQQSYMQHLASDGKRLESFCELQKRNGIEMVSGFQQQGRVARLGANMVGGGILGSGGVSDPVAALKMHYAARANVLSGEMESWRGDIGGR