Information report for ORUFI09G19350.1
Gene Details
|
|
Functional Annotation
- Refseq: XP_015612022.1 — myb-related protein Hv1-like
- Refseq: XP_025876044.1 — myb-related protein Hv1-like
- Swissprot: P20026 — MYB1_HORVU; Myb-related protein Hv1
- TrEMBL: A0A0E0QUF5 — A0A0E0QUF5_ORYRU; Uncharacterized protein
- TrEMBL: A2Z3J1 — A2Z3J1_ORYSI; Uncharacterized protein
- TrEMBL: I1QQT3 — I1QQT3_ORYGL; Uncharacterized protein
- TrEMBL: Q69JE8 — Q69JE8_ORYSJ; MYB transcription factor
- STRING: ORUFI09G19350.1 — (Oryza rufipogon)
- STRING: OS09T0538400-01 — (Oryza sativa)
- STRING: ORGLA09G0141200.1 — (Oryza glaberrima)
- GO:0009751 — Biological Process — response to salicylic acid
- GO:0009753 — Biological Process — response to jasmonic acid
- GO:0010224 — Biological Process — response to UV-B
- GO:0045892 — Biological Process — negative regulation of transcription, DNA-templated
- GO:0090379 — Biological Process — secondary cell wall biogenesis involved in seed trichome differentiation
- GO:1903086 — Biological Process — negative regulation of sinapate ester biosynthetic process
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: Bradi4g36460.3.p, Bradi4g36460.2.p
- Oryza sativa: OsMYB108
- Panicum virgatum: Pavir.2KG384800.1.p, Pavir.2NG452600.1.p
- Setaria italica: Seita.2G289900.2.p, Seita.2G289900.1.p
- Setaria viridis: Sevir.2G300900.1.p
- Triticum aestivum: Traes_5DL_1868E2A6C.1, Traes_5BL_AED68C680.1
Sequences
CDS Sequence:
- >ORUFI09G19350.1|Oryza_rufipogon|MYB|ORUFI09G19350.1
ATGGGGAGGTCACCGTGCTGCGAGAAGGCACACACCAACAAGGGAGCATGGACCAAGGAGGAAGATGACCGGCTCATTGCCTACATCAAGGCGCACGGCGAAGGTTGCTGGCGATCGCTGCCCAAGGCCGCCGGCCTCCTCCGCTGTGGCAAGAGCTGCCGCCTCCGGTGGATCAACTACCTCCGGCCTGACCTCAAGCGCGGCAACTTCACCGAGGAGGAGGATGAGCTGATCATCAAGCTTCACAGCCTTTTAGGCAACAAATGGTCTCTGATAGCCGGGAGGTTGCCAGGAAGAACGGACAACGAGATCAAGAACTACTGGAACACGCACATCAGGAGGAAGCTGCTGAGCCGTGGCATCGACCCGGTGACACACCGGCCGATCAACGACAGCGCGTCCAACATCACCATATCATTCGAGGCGGCCGCGGCGGCGGCGAGGGACGACAAGGCCGCCGTGTTCCGGCGAGAGGACCATCCTCATCAGCCGAAGGCGGTGACAGTGGCACAGGAGCAGCAGGCAGCCGCCGATTGGGGCCATGGGAAGCCACTCAAGTGCCCTGACCTCAATCTGGACCTCTGCATCAGCCTCCCTTCCCAAGAAGAGCCCATGATGATGAAGCCGGTGAAGAGGGAGACCGGCGTCTGCTTCAGCTGCAGCCTGGGGCTCCCCAAGAGCACAGACTGCAAGTGCAGCAGCTTCCTGGGACTCAGGACAGCCATGCTCGACTTCAGAAGCTTGGAAATGAAATGA
Protein Sequence:
- >ORUFI09G19350.1|Oryza_rufipogon|MYB|ORUFI09G19350.1
MGRSPCCEKAHTNKGAWTKEEDDRLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPVTHRPINDSASNITISFEAAAAAARDDKAAVFRREDHPHQPKAVTVAQEQQAAADWGHGKPLKCPDLNLDLCISLPSQEEPMMMKPVKRETGVCFSCSLGLPKSTDCKCSSFLGLRTAMLDFRSLEMK