Information report for ORUFI05G02790.2
Gene Details
|
|
Functional Annotation
- Refseq: XP_025881490.1 — transcription factor MYB61
- TrEMBL: A0A0E0H950 — A0A0E0H950_ORYNI; Uncharacterized protein
- TrEMBL: A0A0E0PH94 — A0A0E0PH94_ORYRU; Uncharacterized protein
- TrEMBL: A2Y082 — A2Y082_ORYSI; Uncharacterized protein
- TrEMBL: Q688D6 — Q688D6_ORYSJ; MYB16 protein
- STRING: ORUFI05G02790.2 — (Oryza rufipogon)
- STRING: OS05T0140100-01 — (Oryza sativa)
- STRING: ONIVA05G02580.1 — (Oryza nivara)
- GO:0001944 — Biological Process — vasculature development
- GO:0009733 — Biological Process — response to auxin
- GO:0010089 — Biological Process — xylem development
- GO:0010119 — Biological Process — regulation of stomatal movement
- GO:0010214 — Biological Process — seed coat development
- GO:0048364 — Biological Process — root development
- GO:0003677 — Molecular Function — DNA binding
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: Bradi2g36730.1.p
- Hordeum vulgare: MLOC_59663.6
- Oryza sativa: OsMYB2P-1
- Triticum aestivum: Traes_1DS_5BAD8947E.1, Traes_1AS_1EE692FDC.1, Traes_1BS_92EA1F290.1
Sequences
CDS Sequence:
- >ORUFI05G02790.2|Oryza_rufipogon|MYB|ORUFI05G02790.2
ATGGGGAGGCATTCTTGCTGCTACAAGCAGAAATTGAGGAAGGGGCTCTGGTCCCCTGAGGAGGATGAGAAGCTCATGAATCACATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGTTCCTAAACTTGCAGGGCTCCAAAGATGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTATCTGAGGCCTGACCTCAAGAGAGGTGCATTCTCTCAGGAGGAAGAAGACCTCATCATTGAGCTCCATGCTGTCCTTGGGAACAGGTGGTCTCAGATTGCAGCTCAGCTGCCTGGGAGGACTGACAACGAGATCAAGAATCTCTGGAATTCTTGCATCAAGAAGAAGCTCCGGCAGAAAGGCATTGATCCCAACACCCACAAGCCCCTCACCGAGGCTGATCGCAGGGGAGCAGCACCCACAGTCAGCACCGAGAGGACCTCAGGGTCCAGCGACGTCAACCCATCAAGTGCTGGTGCTCTAGGGAACTTGAGCCACCTCCTCAGCGAGACAGCACAATCATCAATGCTGCTGCCGGTGTATGATAAGAATCACCCTGAAACTGCAAGCTTGCCACGCCCTAAGGTGCCACCAAAGGAGTTGTTTCTTGACCAGCTTACTGCCGGTCACGAGAGCCCATCAAGTTGCCGCTCATCAGGTCCAACCCTGTATTTTCCTTTCCAGCAACCATTAGGCTACAGTAATGAATGTGGCACTGGGGATGGTGCGAGTATGAATTCACTCTGGTTCAACCAGAATGATTTCAACTGCAGCACAATCTCCACCGTGATGCCACCAGTTTCACCATCAGCCCTCTCAACATCAATGGGGCTGAATCTTCCCCCAGAAAATCCTCGTCACGGAGGCACTGGCATTGGCAACACCCCGTTCTACTGGGATGGTTCCAATCCTAGCAGCAGCGGCAGTACTGGGAGCAGCGGAAGCAACAGTATGGGATTCGAGCCACAGAGCACAACCTCAATTTTGGAGAACAGTGTATTCCCATGGACAGATATCGGACAAGAGAAAGATACCAGAGTTCACTTAGTGGAGGAACTCAAGTGGCCTGATTTGCTCCATGGAACCTTTGCTGAGGCGACGACAGCCATGCAGAACCAGAGCCAATCATTATACGATGATGTGATCAAGGCAGAGAGCCAATTCAACATGGAAGGGATATGTGCCTCTTGGTTCCAGAATCAGCAACCACAACAACAGCTGCAAGCAGCATCAGACATGTATGATAAAGACTTGCAAAGATTGCCCTTGTCTTTTGAACATATCTAG
Protein Sequence:
- >ORUFI05G02790.2|Oryza_rufipogon|MYB|ORUFI05G02790.2
MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQEEEDLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLRQKGIDPNTHKPLTEADRRGAAPTVSTERTSGSSDVNPSSAGALGNLSHLLSETAQSSMLLPVYDKNHPETASLPRPKVPPKELFLDQLTAGHESPSSCRSSGPTLYFPFQQPLGYSNECGTGDGASMNSLWFNQNDFNCSTISTVMPPVSPSALSTSMGLNLPPENPRHGGTGIGNTPFYWDGSNPSSSGSTGSSGSNSMGFEPQSTTSILENSVFPWTDIGQEKDTRVHLVEELKWPDLLHGTFAEATTAMQNQSQSLYDDVIKAESQFNMEGICASWFQNQQPQQQLQAASDMYDKDLQRLPLSFEHI