Information report for orange1.1g046093m
Gene Details
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Functional Annotation
- Refseq: XP_006444458.1 — transcription factor MYB41
- TrEMBL: A0A067HGI6 — A0A067HGI6_CITSI; Uncharacterized protein
- TrEMBL: V4TBM6 — V4TBM6_9ROSI; Uncharacterized protein
- STRING: XP_006444458.1 — (Citrus clementina)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_02496
- Glycine max: Glyma.02G013900.1.p
- Gossypium arboreum: Cotton_A_26358_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A07G1162, Gh_D07G1261, Gh_A11G1005, Gh_D11G1160
- Juglans regia: WALNUT_00024788-RA, WALNUT_00031740-RA
- Manihot esculenta: Manes.01G226200.1.p
- Populus trichocarpa: Potri.014G122700.2, Potri.014G122700.1, Potri.002G198100.1
- Ziziphus jujuba: XP_015891841.1
Sequences
CDS Sequence:
- >orange1.1g046093m|Citrus_sinensis|MYB|orange1.1g046093m
ATGGGAAGAACTCCGTGTTGCGAGAAAGTAGGACTTAAGAAGGGGAAATGGACAGCCAAAGAGGATGAAATATTGACCAAGTATATTCAAGCTAACGGAATAGAGTCGTGGAGGTCCCTGCCGAAGAAAGCAGGGTTGCTGAGGTGTGGAAAGAGCTGCAGATTGAGGTGGGTAAACTACTTGAGAACTGATTTGAGGAGAGGGAACATTACTACTGAAGAGGAAGAGACCATTATTAAGCTGCATGCCTCTTTGGGAAATAGGTGGTCGGTGATAGCAAGCCATTTACCGGGTAGAACAGATAACGAGTTAAAGAACTACTGGAACACACATTTGAGCAAAAAAATTCACACGTTCCAGGGTCCAGTTGGTGGTGAAACCCTATCGTTGCCAAAGATGGTGGACGTGGCCAGCGCTAGTGCCGCAATCGACAAGAGGAAGGCCGGCAAAACAAGTAGATGTGCTACGAAGAAAAACAAAAGCTACATAATTAATAAAGACGATGTTACAAGTAATGTCCCCACACAGAGGCCCCAAGTTAATGGTTCTACTTCTACAGATGATATTGGTAATGTATCCGCTCAGAGACCTGAAGCATATGCTTCAACAGACGTTGGTTATGTCTCCACACGGAGGCCCCAAGTAAATATTTCTATTGACAATGATGCTAATGTCTCCACTCCTAGTCATAGACCTGAGGAAAATGTTTCTATTGAGGAAGCCGCCACACCATTGCCAGCCACGCCAGCGCAAGAGAAAGAGGCTTTGCCCAGAACTGTTATTGAAGGCTGCGTGGATTTGGATCCCTATGCAGAAGATGAGGAAATATTAATGGACCCAATTGCATCTAATCCCTGTCAAGAGACTGGTCTGGTTTCGAGCGAGAAAAGAGAAAGCTTCGTTGTTTGCTCTGGTACGGAGGAAACAACAATGAATATATCAATATTGTGCTTGTGTCCCAGGGGCGAGGAAGAGCAAAAAGAGACTGAAGTTTTAGCACCGTTTGATGAAGACATTGATGCTGAAACGTTGTGTTTCAATAACCTTACGGATCTAACTGAGGTTTGGACTTTACTGGAGGAGACAGAGAATTGTGCCAAGAATATTATTAGGGAGGAAACAGAAATTGGAACCCGGATTGTTGCGAACAATATGGCAAAGAGTGAGGAATTAGAGAGTGCTAATTTGGGTGCAACTGAAGAAAGTGTTGCCTGCTCTTCCGTAACTTCATTTTTTGATGATAATAATTTTGACTGGGATTGGGAGAGTGTTGTTCAAGGGCACGATCGGCAATGTGATGAAGAGAATAATATATTTTCTCGGCCGTGGGAAACCGACAATATGGCTGAAAGAAAAAGTCACGAAATTGGAGAAGTTTTAGACTATGATATGCCAAATGACATGGTTGCTTGGCTTCTCTCTTGA
Protein Sequence:
- >orange1.1g046093m|Citrus_sinensis|MYB|orange1.1g046093m
MGRTPCCEKVGLKKGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNYLRTDLRRGNITTEEEETIIKLHASLGNRWSVIASHLPGRTDNELKNYWNTHLSKKIHTFQGPVGGETLSLPKMVDVASASAAIDKRKAGKTSRCATKKNKSYIINKDDVTSNVPTQRPQVNGSTSTDDIGNVSAQRPEAYASTDVGYVSTRRPQVNISIDNDANVSTPSHRPEENVSIEEAATPLPATPAQEKEALPRTVIEGCVDLDPYAEDEEILMDPIASNPCQETGLVSSEKRESFVVCSGTEETTMNISILCLCPRGEEEQKETEVLAPFDEDIDAETLCFNNLTDLTEVWTLLEETENCAKNIIREETEIGTRIVANNMAKSEELESANLGATEESVACSSVTSFFDDNNFDWDWESVVQGHDRQCDEENNIFSRPWETDNMAERKSHEIGEVLDYDMPNDMVAWLLS*