Information report for OB08G24140.1
Gene Details
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Functional Annotation
- Refseq: XP_006660180.1 — PREDICTED: conserved oligomeric Golgi complex subunit 3 isoform X1
- TrEMBL: J3MTI4 — J3MTI4_ORYBR; Uncharacterized protein
- STRING: OB08G24140.1 — (Oryza brachyantha)
- GO:0006886 — Biological Process — intracellular protein transport
- GO:0007030 — Biological Process — Golgi organization
- GO:0009860 — Biological Process — pollen tube growth
- GO:0048193 — Biological Process — Golgi vesicle transport
- GO:0005801 — Cellular Component — cis-Golgi network
- GO:0005829 — Cellular Component — cytosol
- GO:0016020 — Cellular Component — membrane
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: Bradi3g37360.1.p
- Panicum virgatum: Pavir.6KG286000.1.p, Pavir.6NG239400.1.p, Pavir.8KG076600.1.p
- Setaria italica: Seita.6G168800.1.p
- Setaria viridis: Sevir.6G174600.1.p
Sequences
CDS Sequence:
- >OB08G24140.1|Oryza_brachyantha|MYB|OB08G24140.1
ATGGCGGCGGGCGGCGGCGGCAGGAAGACGCCGTGGACGGAGGAGGAGGACGAGGTGCTGCGGCGAGGGGTGCGCGAGCACCGGCGGCAGAACTGGGCGGAGATCGCGCTGGCGCTGCCCCGGCGCGGGCCCAAGTCGTGCCGGCTGCGGTGGTCCCAGCCCCTGTCGCCGGAGCTGGACAGCCGGGCCTTCACCCCGGAGGAGGACGCGCTCATCGTCGAGCAGCAGCGCGTGCACGGCAACAAGTGGGCCACCATCGCGCGCTGCCTCACCGGCCGCTCCGACAACGCCGTCAAGAACCGCCCACAAGTGCAGCCTGAGATGTCAACGATGCCTTTGAAGGCCCACACTGGCGATTCCTTTGGTGGGCTGAACGCCCCGCTCACGGAGCAGCAGAATGCCGCGATCGCCGCGCTCTCCCGCGCCGTCTCCGAGCGCCCGTTCCCGGCTAACCTGGAGAAAAGTTTAGTGAAGGATGGGGGTGCTATTGTGCCAGAAAAAGAGGCTGCTTTAGAGGAGGGTGCAATGGATGCGGTCTTGGTAAATACACATCAGTTTTACAAATGGTTTTCTGAACTGGAATCAGCTATGAAATCTGAGGTGGATGACACACTGAGCTTATTTGAAGAACTGCAATCCTTGCATTTGAGTGTTGCCACAAAGACAAAAACGTTGCATGATGCTTGCGACCAACTTTTGTTGGAGAAACAAAGGCTGATTGAGTTTGCAGAAGCACTTCGGAGTAGGTTGAACTACTTCGATGAATTGGAAAATGTCTCCACTAGCTTTTATTCTCAAACTATGAACATTGGAAATGAACAGTTTCTTCCACTCTTGAAACGGCTTGATGATTGTATTTCATATGTTGAAAATAATCCACAATATGCTGAATCTGCTGTTTACTTGGTTAAGTTTCGCCAACTTCAGTCTCGTGCATTAGGTATGATTCGTTCACATGTCCTATCAATACTTAAAGCTGCTTCATCCCAGGTTCAAGCGGCAATTCGAGGTAGCGGTACTGCAAAAAACATTGTTACAGAGGGTGTGGAAGCATCTCTTATCTATGTTCGCTTCAAGGCAGCTGCTAGTGAGCTCAAACCAATCTTAGGTGAAATTGAAAGTAGATCTTCAAGAAAAGAATACACACAGATTCTCTCAGAATGTCACAGCTTGTTCTGTGAGCAGAGGCTCTACTTGATACGAGGCATGGTGCAGCAACGAATTTCTGAGTTTGCTAGAAAAGAGGCTTTGCCTTCTTTAACAAGATCTGGATGTGCCTATCTGATGGAGGCATGTCAATTTGAACACCAGCTTTTTGCCCACTTTTTCCCAGCATCTGCATCAGAGGCTTCAAGTATTGCTCCTTTAATGGACCCATTGTGCACATACTTGTATGATACTCTGAGGCCTAGACTGATATACGAGGGAAACATTGATTCTCTTTGTGAACTAGTTGACATTCTGAAGGTTGAAGTCCTAGGGGAACAGCTAAGTAGACGTGGTGAATCAGTAGCTGGGCTTCGACCAATATTGCAAAGGATACTTGCAGATGTTCATGAGCGGTTGGCCTTTTGTGCTCGGACTCATATTCGTGAGGAGATTGCAAACTTCCGCCCATCTGATGAAGATCTGGACTATCCTGGAAAGCTTGAGAGATCTGTAGATGCAACAGCAAGTTCTAATGCCAGTGGCAACTCAGACATATATGTTACATGGTATAGACCACTGGAAAAAACGGTGTCTTGTCTGTCAAAACTATATCACCGCCTAGAACCTTCAGTTTTTACTGGATTAGCACAGAATGCAAGCAAAGCCGTTGCAAAAAAAGCAACCGCGATGGATGGGCAGCTTTTCCTAATTAAGCACCTCCTTATTTTAAGAGAACAGATCGCTCCATTTGATATCGAGTTCTCAGTCACGCATAAGGAGCTGGATTTCTCCCATTTGCTGGATCACTTAAGAAGGATTCTTAGGGGGCAGGTCTCATTGTTTGATTGGTCAAGGTCAACATCACTTGCTAGGACGTTTTCTCCCCGTGTTCTGGAGAATCAAATTGATGCCAGAAAAGAACTGGAAAAAAGCCTCAAATCTACATGTGAAGAGTTTATAATGTCCATTACAAAATTAGTAGTGGACCCAATGCTTTCTTTTGTTACTAAGGTAACTGCTGTCAAAGTTGCACTGTCCTCAGGTAGCCAGGGTCAGAAATTGGATTCTGTTCTAGCAAAACCCCTTAAGACCCAAGCATTTGCTTCTTCTGATAAGGTTGCAGAGCTGGTTCAAAAGGTAGGGGCTGCTATTCAGCAAGATTTACCTAAAGTCATGACCATGATGAGGTTGTATTTGCAAAATCCATCTACTCGGTTGATTTTATTCAAACCCATCAAGACAAATATAGTTGAGGCTCATATTCAGCTCCACTCCCTTCTGAAGTCGGAATACACAGCTGACGAAATCCAATCTATTGGTATGTTGCCTGTCAGGGTGCACAATGCCATGCTTGACATGGTGTTCCCACTGGGCCAGCCATGGCGTGTCCGTCATTGCGTCTTTTCATCTAACAAGTACACAAGTGGTTCCGTCTGGCCAAGTACTGGACTACTCCCAACCCCCCCAGCAGTTGTGTCATGTGATCACCCTTTAATACACCTGAGATCGCTCTGTGCTGATCAAAATGTCGACTAG
Protein Sequence:
- >OB08G24140.1|Oryza_brachyantha|MYB|OB08G24140.1
MAAGGGGRKTPWTEEEDEVLRRGVREHRRQNWAEIALALPRRGPKSCRLRWSQPLSPELDSRAFTPEEDALIVEQQRVHGNKWATIARCLTGRSDNAVKNRPQVQPEMSTMPLKAHTGDSFGGLNAPLTEQQNAAIAALSRAVSERPFPANLEKSLVKDGGAIVPEKEAALEEGAMDAVLVNTHQFYKWFSELESAMKSEVDDTLSLFEELQSLHLSVATKTKTLHDACDQLLLEKQRLIEFAEALRSRLNYFDELENVSTSFYSQTMNIGNEQFLPLLKRLDDCISYVENNPQYAESAVYLVKFRQLQSRALGMIRSHVLSILKAASSQVQAAIRGSGTAKNIVTEGVEASLIYVRFKAAASELKPILGEIESRSSRKEYTQILSECHSLFCEQRLYLIRGMVQQRISEFARKEALPSLTRSGCAYLMEACQFEHQLFAHFFPASASEASSIAPLMDPLCTYLYDTLRPRLIYEGNIDSLCELVDILKVEVLGEQLSRRGESVAGLRPILQRILADVHERLAFCARTHIREEIANFRPSDEDLDYPGKLERSVDATASSNASGNSDIYVTWYRPLEKTVSCLSKLYHRLEPSVFTGLAQNASKAVAKKATAMDGQLFLIKHLLILREQIAPFDIEFSVTHKELDFSHLLDHLRRILRGQVSLFDWSRSTSLARTFSPRVLENQIDARKELEKSLKSTCEEFIMSITKLVVDPMLSFVTKVTAVKVALSSGSQGQKLDSVLAKPLKTQAFASSDKVAELVQKVGAAIQQDLPKVMTMMRLYLQNPSTRLILFKPIKTNIVEAHIQLHSLLKSEYTADEIQSIGMLPVRVHNAMLDMVFPLGQPWRVRHCVFSSNKYTSGSVWPSTGLLPTPPAVVSCDHPLIHLRSLCADQNVD