Information report for NNU_006777-RA
Gene Details
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Functional Annotation
- Refseq: XP_010255473.1 — PREDICTED: uncharacterized protein LOC104596138
- Refseq: XP_010255474.1 — PREDICTED: uncharacterized protein LOC104596138
- TrEMBL: A0A1U8A1I4 — A0A1U8A1I4_NELNU; uncharacterized protein LOC104596138
- STRING: XP_010255473.1 — (Nelumbo nucifera)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn380251
- Juglans regia: WALNUT_00020376-RA
- Nicotiana benthamiana: Niben101Scf07391g04031.1, Niben101Scf05056g00001.1
- Nicotiana tabacum: XP_016450200.1, XP_016458193.1, XP_016458192.1, XP_016458191.1, XP_016458190.1, XP_016458188.1
- Populus trichocarpa: Potri.014G079300.1, Potri.014G079300.2
- Prunus mume: XP_016649753.1
- Prunus persica: Prupe.2G158300.1.p
- Solanum tuberosum: PGSC0003DMP400005488
- Vitis vinifera: GSVIVT01027493001, GSVIVT01019834001
Sequences
CDS Sequence:
- >NNU_006777-RA|Nelumbo_nucifera|MYB|NNU_006777-RA
ATGGAAGAAGCTAAGAAAGAGGAGAGTAATGTGGAAGCTACCAAGGATGTTACAGTCGCTTCGACTTCTTCAGTTTCCGATAGTAGTTGTGACACTGTTGTTCCCAAGTTAGGCTCTGTTCAAGGGAGAACAACTGGTCCCACCAGACGTTCGACAAAGGGAGCTGAATGGTTCCCTGGTCGGTCAGATGTGCAGTGTCTGCATCGATGGCAGAAGGTTCTCAATCCTGAACTCATTAAAGGACCATGGACAAAGGAGGAAGATGATCGTATTATTGAGTTGGTAGAAAAATATGGTTGTAAAAAGTGGTCTGTCATTGCAAAGTCCTTGCCAGGCCGCATAGGAAAACAATGTCGAGAAAGGTGGCACAACCATTTAAACCCTGCTATAAAGAAGGACGCATGGACCAAGGAGGAGGAGTTGGCTCTTATACGTGCACACCAAATATATGGGAACAAATGGGCTGAAATCGCAAAATTGCTCCCTGGAAGGGCGGACAACTCAATTAAGAATCATTGGAACTGCTCAGTAAAGAAAAAGTTGGATTCATATTCAGCTCATGGGTCTTTGGGGGATTTGCCTCCAATTGCTTTTTCTGATTCCTACAATCATGAAATAAAAGTGGAGCATAAAAGGGATGAAGTGGTAGGCAGAAGTCCTAGAACAATGGTTTGTTTTGACAAGAAAGTTGACACGGGCAATGGTGTTGATGCTAATTTGAGAGGTTCAATTCTTGGAAATGCAAATGGAGTACAGACACATCTACAACTATGGCCTGTTGACATAGAAAACTGTAGATCTTCCAAAGTAGAAGTGGATGGTTTGGAGAAACCATCCATTGAGACCCTATGTGATGATAAAGATGCTGGGGAAAACGGTCTGACCAGTGAACCGTGCATCAACAATGCTAAACTGTCAGATGATTCACAACATGGAATTGTTGTTCAATCAGGAAAATTGTGTGGGGTTCCATTTGATGATTCTTTGGCATTATTGCATTCAAATAAATCTGCAAGTGTACCTGCTGACTGTAAAAGTCTTTCATCTCCTCAACCTCCTTCACTGCGTGTAATTGTGTCAGCTTCTCCATATGTTGCCTTGGACATGACTGAATGTAGTGGAAGAAATGGTAGTCCTCCAGAAAGGTCTCTTCCTACAACCATTAAAAAATCACAAGAATCACCAAAGAGGCCCCAGAATTATGCTCATTTCATGAATACGTCATGTGGTAAGGATTCAAGATTCAACTTTCAACGTTACAGTAACTTCTCAAGATTGTCAGAACATGAATTTAATGGTGACAACAGTGTAGTTGGTAAGCACCCCAAAGTCTCCGGGACAGGACATTCTGAGGATACAAATTATGGCCGTTTGTGTTATGAGCCTCCCCAGCTGAAGGATTTAAATATTGCTTTGGCAACTGGTGGATTTTCTAGTACAGATAACTATTTTCAGAAAGAAAACAATACAGTCTGTTATTCTACTCCACCTAGCTGCATTCAAGTAACCTCTGGAAATGGTAGTAGCCCAGACCATATATTGAGGAGTGCTGCAAGGAGTTATCAAAATACCCCATCTATCATAAGAAAGAGAGGGCGTGAGGCTTCCAAGCAAGCTGGCAATTCAAATGATTCTGATGGCATTTGTACACCAGAAGCAAGGTATGGTAGTTCAAATGACAGGCTGAGGATGATGCCTTTCTGTGACCATGGTGGTCAAGATGATCTCAATAGTACGGACCTTCTAAACGTGAAACGACTTTTCCTCTCTCCCCGAAATTCTCCAGAAACTGAAACATCTGCTTTGAAATCAGTGGAAAAACGCCTTGAACATGCCTTTGATATGGAATGGGATAATCCAAGGGCTAAATGTAGTCCCTCAACTACAGCAAGTGATTCTTCTGATGCTGTTCATTGTTCACATACAAAAGTGATGCCTTTTGACAACTCTCCTGAATCTTTAGTGGAGCATTCGGGTCTTTCTTGGAACTTCATTTCACCTGATTCTGGGTGCAGTTGCAACTCTGTGGCTTGA
Protein Sequence:
- >NNU_006777-RA|Nelumbo_nucifera|MYB|NNU_006777-RA
MEEAKKEESNVEATKDVTVASTSSVSDSSCDTVVPKLGSVQGRTTGPTRRSTKGAEWFPGRSDVQCLHRWQKVLNPELIKGPWTKEEDDRIIELVEKYGCKKWSVIAKSLPGRIGKQCRERWHNHLNPAIKKDAWTKEEELALIRAHQIYGNKWAEIAKLLPGRADNSIKNHWNCSVKKKLDSYSAHGSLGDLPPIAFSDSYNHEIKVEHKRDEVVGRSPRTMVCFDKKVDTGNGVDANLRGSILGNANGVQTHLQLWPVDIENCRSSKVEVDGLEKPSIETLCDDKDAGENGLTSEPCINNAKLSDDSQHGIVVQSGKLCGVPFDDSLALLHSNKSASVPADCKSLSSPQPPSLRVIVSASPYVALDMTECSGRNGSPPERSLPTTIKKSQESPKRPQNYAHFMNTSCGKDSRFNFQRYSNFSRLSEHEFNGDNSVVGKHPKVSGTGHSEDTNYGRLCYEPPQLKDLNIALATGGFSSTDNYFQKENNTVCYSTPPSCIQVTSGNGSSPDHILRSAARSYQNTPSIIRKRGREASKQAGNSNDSDGICTPEARYGSSNDRLRMMPFCDHGGQDDLNSTDLLNVKRLFLSPRNSPETETSALKSVEKRLEHAFDMEWDNPRAKCSPSTTASDSSDAVHCSHTKVMPFDNSPESLVEHSGLSWNFISPDSGCSCNSVA