Information report for mrna29961.1-v1.0-hybrid
Gene Details
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Functional Annotation
- Refseq: XP_004294062.1 — PREDICTED: myb-related protein 330
- Refseq: XP_011460714.1 — PREDICTED: myb-related protein 330
- TrEMBL: A0A2P6Q8P0 — A0A2P6Q8P0_ROSCH; Putative transcription factor MYB-HB-like family
- STRING: XP_004294062.1 — (Fragaria vesca)
- GO:0009751 — Biological Process — response to salicylic acid
- GO:0009753 — Biological Process — response to jasmonic acid
- GO:0045893 — Biological Process — positive regulation of transcription, DNA-templated
- GO:2000652 — Biological Process — regulation of secondary cell wall biogenesis
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_36291
- Cicer arietinum: XP_004488797.1
- Citrus sinensis: orange1.1g045411m
- Gossypium arboreum: Cotton_A_35376_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D01G0792, Gh_A01G0770
- Malus domestica: MDP0000133542, MDP0000215675
- Manihot esculenta: Manes.14G011000.1.p, Manes.06G175200.1.p
- Populus trichocarpa: Potri.005G096600.2, Potri.005G096600.1, Potri.007G067600.1
- Prunus mume: XP_008226183.1
- Prunus persica: Prupe.4G136300.1.p
- Pyrus bretschneideri: Pbr033618.1
- Ricinus communis: 30169.m006322
- Ziziphus jujuba: XP_015866129.1
Sequences
CDS Sequence:
- >mrna29961.1-v1.0-hybrid|Fragaria_vesca|MYB|mrna29961.1-v1.0-hybrid
ATGGTAGGGAGGGGAAGAACACCATGTTGTGATAAGAGCCAAGTGAAGAGAGGACCTTGGAGTCCTTCTGAGGACTTAAGGCTCATCAGCTTCATTCAGAAACACGGTCATGATAACTGGAGGGCTCTCCCTAAACAAGCAGGTTTACTGCGATGTGGGAAAAGTTGTCGTTTGAGATGGATCAACTACCTTCGGCCTGATCTGAAGCGAGGTAACTTCACAAAGGAGGAAGAAGAGTCCATCATTATGCTACATGAAGCATGGGGAAACAAGTGGTCCAAAATTGCATCCCATTTTCCTGGAAGAACAGACAACGAAATCAAGAATGTGTGGAACACTCATCTGCGGAAGAAATTGGCTTTGAAGTATTCTTGTGGAGATGATCAATCAAAGGAGTTATCTTCCATAACTTCCTCTTCATCCTCATCATCTTCTTCCAGTGCTTCATTTCAGTTGTCTAGTGGAGAACCGAGTGCAGGAGTCACCGCTGAATTACAGAATCAACCTAACCAAGAAAGCAACACGTCCAAGACCCGGAACGACTGTGAACTGCCCGATTCGTTGACAATCCAAGAAAAACTTGAAAAAAAATTACCAATGGAAGTAACAGATCAAGTTAGGGTTGATGATGCTGTAGGCATGAAAATGTTGACGACAAGTTCATCCTTTTCATCCTACGCCTCCTCAAACGGTTCAAGTTCCAGCCAAGGGGGCGGTGTTTCGAGGCCAGATGATTTGGTGTTTGACTTAAAAGGAGCTTATGAACCTCAAATAGCAGACAAGGCAGTCTTTGAAATTCCATTCGAATCTGACTATGGTTTCTGGAACATGTTAGATGGGACGTTATCATTTGAGGGTAACCCTGAGCCTCTACTACCTCAGGCGGATCAGACCTACCAGAGCTCAAACTTGGAGCTAGTCGAAAGTGGGAACTGGCTCAGTTACTTGGAGAAAGAACTTGGCCTTGAGGATTCAACAAAGACCAACAACCAAGATTTTGTGATGAAGGATGCAACCGAACAATTAGCGTCGGAGAAGTACTGTGATAAGTTGCCAAAGCCTACAGAAATGGACCACGGCATGGATGATTACTTCGGAATGTGGCCACCTTTGCCAGAGAACTCCGCTAACTGA
Protein Sequence:
- >mrna29961.1-v1.0-hybrid|Fragaria_vesca|MYB|mrna29961.1-v1.0-hybrid
MVGRGRTPCCDKSQVKRGPWSPSEDLRLISFIQKHGHDNWRALPKQAGLLRCGKSCRLRWINYLRPDLKRGNFTKEEEESIIMLHEAWGNKWSKIASHFPGRTDNEIKNVWNTHLRKKLALKYSCGDDQSKELSSITSSSSSSSSSSASFQLSSGEPSAGVTAELQNQPNQESNTSKTRNDCELPDSLTIQEKLEKKLPMEVTDQVRVDDAVGMKMLTTSSSFSSYASSNGSSSSQGGGVSRPDDLVFDLKGAYEPQIADKAVFEIPFESDYGFWNMLDGTLSFEGNPEPLLPQADQTYQSSNLELVESGNWLSYLEKELGLEDSTKTNNQDFVMKDATEQLASEKYCDKLPKPTEMDHGMDDYFGMWPPLPENSAN*