Information report for mrna25982.1-v1.0-hybrid
Gene Details
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Functional Annotation
- Refseq: XP_004301157.1 — PREDICTED: myb-related protein 308-like
- TrEMBL: A0A2P6SIK9 — A0A2P6SIK9_ROSCH; Putative transcription factor MYB-HB-like family
- STRING: XP_004301157.1 — (Fragaria vesca)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g040841m
- Gossypium arboreum: Cotton_A_31811_BGI-A2_v1.0, Cotton_A_25875_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A08G1106, Gh_D08G1385, Gh_D12G1140, Gh_A12G1020, Gh_A08G1105
- Malus domestica: MDP0000915330, MDP0000157940
- Populus trichocarpa: Potri.014G100800.1, Potri.002G173900.1
- Prunus mume: XP_008233115.1
- Prunus persica: Prupe.2G192100.1.p
- Pyrus bretschneideri: Pbr018379.1, Pbr024492.1
- Vitis vinifera: VvMybPA1
- Ziziphus jujuba: XP_015888701.1
Sequences
CDS Sequence:
- >mrna25982.1-v1.0-hybrid|Fragaria_vesca|MYB|mrna25982.1-v1.0-hybrid
ATGGTCTTGATTACAAAAGGAGGTATATCGACTTCTAGGTGCAATGTGGTTCTGACAGAGGAGGCCACCGGATTGATCGATGGAGGCGGCAGCTTCAACGACCCTGATAAATGTTGGGCTCTAGTAAATTCGGGTATGCAGGAATACGGCCTGAAGTGTGGGTTGGGCCTTGGCCTTAGCCCACTTTGTCACTTACCATTCTCTTCTCTGTTGGCTTGTTTGGATCAGACTTGTGCTAGCGAGAAGGGAGCCAAGATGATGAAGGTCGAGACTAGGACTCCACACAAGGGATGGCCTACGGTTGAAAATATTGTACCTGACTTTCTGCATAATATATTGATATTATTAATGATGAAAAGTTCGCCAGAGGCCTGTTCGGGATGGCTGCCAGGCCTTGATCACGATCAGGCTGCAATCCTCAGGGTGGGCTCTGATCGACATATCGACTCTTTCAAGCCAGTTGGTCTGCACAGAGGTCCTTGGACTCCCAGAGAGGACACATTGCTCACCAAATATGTTGAAGCTCATGGTCATGGCCTTTGGAGAACCTTGCCCAAAAAAGCTGGTCTCCTTAGGTGTGGGAAGAGTTGCAGGCTAAGATGGATGAGCTACCTGAGGCCAGACATCAAGAGAGGAAACATTACTCCAGACGAAGATAACCTAATTATCCGAATGCATTCACTTCTCGGAAACCGCTGGTCTCTCATAGCAGGTAGACTTCCAGGTCGAACCGATAACGATATCAAAAACTACTGGAACACCAATCTCAGAAAAAGGCTCCTGAGCGAAGGAACTGACCCGAGCACGCACCAAAAACTATCCCAGCCTCCGGCTTCCAAGGAAAACAAGAGTAAGACGCAGCAGAACCACAAAGCCAAGAACAAGAACAATAATGAAAAAAGCTTAGTGCCCGAAAAGCCTAAGGTCCATATCCCCAATCCCACCAGGGTCACTTCCTTTGTTAACCTACCAAGAAAAGATAGATTTACCACAGCAAGCACTGCACTGTCTTCTAGCCAGGATGAAGTTCTGGATCATGTTAACAATGTTGTTATTCCTTGGTCGGATTTCAAAGAGGGTGGGGTGGTCTTCTCTGACTGTGATTGGTCGTCGTCTAATTTCGAGTGTGATCAGTCTCGAATCATACCTAATGTTGCAGCTGGTGGTGATGACTACACTGGGGAAAATATATACGAGGAATATCTGCAGGCCCTTCTGAATACTACAGATCAAGATCAGAACTATCCAGTTGAGTTAGACTCGTTTGCTGAGTCACTGCTGATCTGA
Protein Sequence:
- >mrna25982.1-v1.0-hybrid|Fragaria_vesca|MYB|mrna25982.1-v1.0-hybrid
MVLITKGGISTSRCNVVLTEEATGLIDGGGSFNDPDKCWALVNSGMQEYGLKCGLGLGLSPLCHLPFSSLLACLDQTCASEKGAKMMKVETRTPHKGWPTVENIVPDFLHNILILLMMKSSPEACSGWLPGLDHDQAAILRVGSDRHIDSFKPVGLHRGPWTPREDTLLTKYVEAHGHGLWRTLPKKAGLLRCGKSCRLRWMSYLRPDIKRGNITPDEDNLIIRMHSLLGNRWSLIAGRLPGRTDNDIKNYWNTNLRKRLLSEGTDPSTHQKLSQPPASKENKSKTQQNHKAKNKNNNEKSLVPEKPKVHIPNPTRVTSFVNLPRKDRFTTASTALSSSQDEVLDHVNNVVIPWSDFKEGGVVFSDCDWSSSNFECDQSRIIPNVAAGGDDYTGENIYEEYLQALLNTTDQDQNYPVELDSFAESLLI*