Information report for mrna04232.1-v1.0-hybrid
Gene Details
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Functional Annotation
- Refseq: XP_004306055.2 — PREDICTED: transcription factor WER
- TrEMBL: A0A2P6S3Q0 — A0A2P6S3Q0_ROSCH; Putative transcription factor MYB-HB-like family
- STRING: XP_004306055.1 — (Fragaria vesca)
- GO:0009737 — Biological Process — response to abscisic acid
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Capsicum annuum: CA02g27040
- Citrus sinensis: orange1.1g047854m
- Gossypium arboreum: Cotton_A_25837_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A07G1617, Gh_D07G1816
- Malus domestica: MDP0000286143
- Manihot esculenta: Manes.02G058900.1.p
- Nicotiana tabacum: XP_016453190.1
- Populus trichocarpa: Potri.004G115600.1
- Prunus mume: XP_008230410.1
- Prunus persica: Prupe.3G249600.1.p
- Pyrus bretschneideri: Pbr023547.1, Pbr016603.1
- Solanum lycopersicum: Solyc02g089190.1.1
- Solanum melongena: Sme2.5_00037.1_g00008.1
- Solanum tuberosum: PGSC0003DMP400002480
Sequences
CDS Sequence:
- >mrna04232.1-v1.0-hybrid|Fragaria_vesca|MYB|mrna04232.1-v1.0-hybrid
ATGGCTAACAATTTTCTTGTAATCCTCAACATCAGCACTGTTCTTGCTAGAGAGTTAGAAGACACACTTGTTGAGATGCAATTGGTTTACAGTTGTGGAGCTGGTGATAGAAACCGTGTCGGAACACTTGGACTCAGATTTGTTGATGAGAGGGTCAATTTCTTTAAGAGACTGAAACAGAGATTTGGTTCAAAAATGTTGACCATGATAGATATAAAACACAGAGAGAAAGACACAACTATACAAGCAAGGCTTCCAATTGAGAATCTGCTAGAGAAATTGAGGTACATGGCAATGGCTGGTGTGATGATGGGATGGGGCGGTGTTGAGGAAAGAGGGTGGAGGAAAGGTCCTTGGACTCCTGAAGAGGATAAGCTGCTCAGTGAGCATGTCAATTTGCATGGAGAGGGAAGATGGAGTTCTGTTGCTAGGTGCACAGAGGGTATTGAAAACTTGAACCCTGAGTCATCCCTACTTTCATTACATGAGTCAGCTACTCCAAAGAGTTACAAACTGCTTGCTCTTGGGGTCTTCATGAGTGGGAAAAGCTGCAGACTTAGATGGGTGAATTATCTAAGGCCTGGACTGAAGAGAGGCCATTTAACACCTCAGGAGGAAGGCATTATTATTGAATTGCATGCTTTATGGGGTAACAAGTGGTCTACAATTGCTAGATACTTGCCTGGGAGAACAGACAATGAGATAAAGAACTACTGGAGAACTCATTTCAAAAAGAAAGACAAATGCACCGAGAAGCAGAAAAAACGAAAAGCTCAAATCCTAAAAGAGAAGCAACAACAATTGGAAGATGTAGAGACTGATCATGAAAACAAGAAAATAAAATCAGCCAATACTAGTACTGCACTACAGGGACATGGTGAAGCCTTGGCCTGCAGCAGCGAGTTACAAAATAATAATGTCATCACTGATGAGCTGCAGCAGCTGGCACAAGCAACTCAAGAGATGAATGTTGTATTTACATGCCCGAATATGGATGAGATTCAAAGCTTTCCTGTGCTAGCGTCGATGAACCAGTTAGGCGGTACCAGTACTAGTGTTGTTGAATCTACTATATGGTCATCCGATAACACTGCCATCATTAACATTGGATCAGAAGATGATCAAGGGTTTTGGGGACAACTCTGGAACCTAGACGATGATCATTGTCATGTACAAGCTAACCGCATGGAACCTCACACGAGCTGTAGCAATAGTGAGAGCCTGAACAGATTAGCCTTGCATCAGAACCAAGCAATTTCTGCTACATCTTTTGGTGCCATACACACTACTGGAGCTACTAGGGTTAACAATTTTTCTTGGGGAGAGGATATTCATACCGATAAGTGCTTCTATAGTGGATCAGGCTACATATTTTGA
Protein Sequence:
- >mrna04232.1-v1.0-hybrid|Fragaria_vesca|MYB|mrna04232.1-v1.0-hybrid
MANNFLVILNISTVLARELEDTLVEMQLVYSCGAGDRNRVGTLGLRFVDERVNFFKRLKQRFGSKMLTMIDIKHREKDTTIQARLPIENLLEKLRYMAMAGVMMGWGGVEERGWRKGPWTPEEDKLLSEHVNLHGEGRWSSVARCTEGIENLNPESSLLSLHESATPKSYKLLALGVFMSGKSCRLRWVNYLRPGLKRGHLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKKDKCTEKQKKRKAQILKEKQQQLEDVETDHENKKIKSANTSTALQGHGEALACSSELQNNNVITDELQQLAQATQEMNVVFTCPNMDEIQSFPVLASMNQLGGTSTSVVESTIWSSDNTAIINIGSEDDQGFWGQLWNLDDDHCHVQANRMEPHTSCSNSESLNRLALHQNQAISATSFGAIHTTGATRVNNFSWGEDIHTDKCFYSGSGYIF*