Information report for MDP0000607330
Gene Details
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Functional Annotation
- Refseq: XP_008369060.2 — LOW QUALITY PROTEIN: transcription factor MYB11
- TrEMBL: A0A498K4R8 — A0A498K4R8_MALDO; Uncharacterized protein
- STRING: XP_008369060.1 — (Malus domestica)
- GO:0009651 — Biological Process — response to salt stress
- GO:0009723 — Biological Process — response to ethylene
- GO:0009733 — Biological Process — response to auxin
- GO:0009813 — Biological Process — flavonoid biosynthetic process
- GO:0045893 — Biological Process — positive regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_02496
- Cicer arietinum: XP_004494411.1
- Fragaria vesca: mrna02324.1-v1.0-hybrid
- Glycine max: Glyma.02G013900.1.p, Glyma.10G014600.1.p
- Juglans regia: WALNUT_00024788-RA
- Lotus japonicus: Lj1g3v4863050.1, Lj5g3v1601810.1
- Populus trichocarpa: Potri.002G198100.1
- Prunus mume: XP_008235184.1
- Prunus persica: Prupe.8G270000.1.p
- Pyrus bretschneideri: Pbr022669.1, Pbr030848.1
- Ziziphus jujuba: XP_015891841.1
Sequences
CDS Sequence:
- >MDP0000607330|Malus_domestica|MYB|MDP0000607330
ATGGGGAGGGCGCCGTGCTGTGAGAAAGTCGGTCTCAAGAAGGGAAGGTGGACGGCGGAGGAGGATGAAATCTTACTCAATTATATCCAGGCCAATGGGGAAGGCTCCTGGAGGTCTTTACCCAAGAATGCAGGGTTGCTGCGGTGTGGAAAGAGTTGCAGACTGAGATGGATAAATTATCTGAGAGCTGACTTAAAGAGGGGAAATATTTCTTCTCAAGAGGAAGATATCATCATCAAATTGCATGCTTCTTTGGGTAATAGGTGGTCTTTGATAGCGAGTCAATTACCAGGAAGAACMGACAATGAAATAAAGAACTACTGGAACTCTCACTTGAGCAGAAAAATTGGCACCTTCAGGAGGCCTGCCACCACCACCGTCATTACTACTGAAATTAGCACCAGTKYCCCACCAGCCGGTGATGAAGTTTCCGCAGCTATGGAATTAGGCCCTCCCAAAAGAAGGGGCGGCAGAACCAGTCGCTGGGMCATGAAGAAGAACAAAACCTACTCTACCACCAAACCCAAAGGCCTCAAGGCCCGGCTGAGGCAGAGCCACCACAAACACGATAATATTGCTGCTGCTGCTGCTGATGATGATCGTCTCAATAATGCCCACGAGGCAATTGCCTTGCCTACTAAAAGTAATAATAAAAACGTGGACACCATGCAGGACGGTTACGTGCTACTAATGGAGGTCCCGGACCAGCAGCAGGAAACTAGAGGTGGAGGAATAGCAATGCCGGCAACGGTCATTGATCATCAGAAAGAAACTGATGGCGAAAAACTAATTTTAGGACCACATCCACATGGACATGACGACGATGATATGAATGAATATGTCGGCATTAATGGAGGGTTGTTGGGTTTTACTGACTACTTGATGGACGACATTAATGAGGACGAGATACTGGATCCAAATGGGGTTATGGCTTTAAGTTCAAGTGAAATAAACATTCATCAAGATGCTGATCATTTTCCGGACGCGGTTATAAGTGATCATCAGGACACAGAATTACCATCGTCATGTGACCAACTAGTCATATGTCCAAACAAAGTTATGACGACGACGACGACTACTACGGCATCCAGTGATGATCATCACGATCAGGAGCTAGAGAGCAGCAGCTGCGGTTGTAATTTGAGCTCCTCGTCGTCGATCTCAAACTCAAACGGAAAAGTTGTGACGGGGGACTTGCATTCATGCGGCTCTTCATTGTCACTGACAAATACTAGTAATTGTGATACGGAGGACGGTCATACTGCAGGTGGATTCGGAAATCACGATCAAATATTATGGGATTGGGAGAGTGTACTTAGCAATGCTGGGACTGGGCATGACTACTTATGGGATGGCCATGACAGACAAAACATGCTGTCTTGGTTGCGGGAAGGAGAATCTGCTACTGCTGCTGGTGATGATGATCATGCTGATGCCATGGATTTTTAMRARSCMAAMCCACCACKGGRAAAATCCTCGGGCTACCAAGCCAGGAAGCACTAA
Protein Sequence:
- >MDP0000607330|Malus_domestica|MYB|MDP0000607330
MGRAPCCEKVGLKKGRWTAEEDEILLNYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISSQEEDIIIKLHASLGNRWSLIASQLPGRTDNEIKNYWNSHLSRKIGTFRRPATTTVITTEISTSXPPAGDEVSAAMELGPPKRRGGRTSRWXMKKNKTYSTTKPKGLKARLRQSHHKHDNIAAAAADDDRLNNAHEAIALPTKSNNKNVDTMQDGYVLLMEVPDQQQETRGGGIAMPATVIDHQKETDGEKLILGPHPHGHDDDDMNEYVGINGGLLGFTDYLMDDINEDEILDPNGVMALSSSEINIHQDADHFPDAVISDHQDTELPSSCDQLVICPNKVMTTTTTTTASSDDHHDQELESSSCGCNLSSSSSISNSNGKVVTGDLHSCGSSLSLTNTSNCDTEDGHTAGGFGNHDQILWDWESVLSNAGTGHDYLWDGHDRQNMLSWLREGESATAAGDDDHADAMDFXXXXPPXXKSSGYQARKH*