Information report for MDP0000405669
Gene Details
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Functional Annotation
- Refseq: XP_008393089.2 — stress response protein NST1-like
- TrEMBL: A0A498HZJ9 — A0A498HZJ9_MALDO; Uncharacterized protein
- STRING: XP_008393089.1 — (Malus domestica)
- GO:0009507 — Cellular Component — chloroplast
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Citrullus lanatus: Cla019144
- Fragaria vesca: mrna09546.1-v1.0-hybrid
- Gossypium arboreum: Cotton_A_32145_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A13G2222, Gh_D13G0946
- Manihot esculenta: Manes.14G072800.1.p
- Populus trichocarpa: Potri.015G067700.1, Potri.012G072500.1
- Prunus mume: XP_008239672.1, XP_008239671.1
- Prunus persica: Prupe.5G183500.4.p, Prupe.5G183500.3.p, Prupe.5G183500.2.p, Prupe.5G183500.1.p
- Pyrus bretschneideri: Pbr011520.1
- Vitis vinifera: GSVIVT01008090001
Sequences
CDS Sequence:
- >MDP0000405669|Malus_domestica|MYB|MDP0000405669
ATGGTGMGACCTGCTTGTGGTGACAAGCTGCATGTGAAAARGGGCACTCTTTTGACTGCGGAGGAAGATGCAAAGATACTTGCGCATGTGTCGAAGYATGGACCGAGTAACTGGACTTCTGTTCCCAAAAAAACAGTGTTTACAGGAGTTACAAGATGTGGAAAGAGCTGCAAGCTAAGGTGGACTAATCACCTCAAGTCTAATCTGAAGCATGAATCCTTCACGCCTCATGAGGAGGAATTGATTGTCAGGCTTCATGCCACAATWGGTAGCAGATGGCCAACAATAGCTCAACACCTTCCTGGGAGGACAGACAATGATGTAAAGAACTACTGGAACACTAAGCTGAAGAAGAAGCTCTCAGAAATGGGAATTGATCATGTTACTCATAAGCCCTTCTCTCAAATCTTAGCGGATTATGGAAACATCGGTGGCGTCCAGAAAGTTGGAATGAGAATCGGGATAAGTTCTCTCAACAAGGACTTGAGGAACGCAATGCGGATGAAGCCAGCAGAGCCATACTCATTGCCAGCACAAGGGTTTTCCAACATCAACAGCCATTTGATGCCAATTACAATGATACCAACCAAAGCGGAGCCAATTCTAGACAGTTTCTTGGGCCACACTCAACCTGGCAGCCAACCCCCGGATCTTCTCACACAGCTTGAGGCCATAAAWTTGGTGACAGAAGCCTTCAAATCCACCGAATCCCAATCTTCTGCACCAAATTTTTACAGTCACGAAGGAACATTGYCATCATCGTCTTCTACTTCATCTGCAACACAAGAGCAGGCAACCCTGCAGGCRTTTAGCTGGARCGATTTTCTCCTTGAAGACGCGTTWATGCCAATTGGTGACGCCCAAGAACACGAAARCAAGGCTGAGTATTCATCGAATTCGAAGGACCAAGCACAAGTAGCAATACAACAAAGCCAAATCGACATGGATTATGCAATCTCARYAAATGAAGTTGAAGCTACATCGGCGGCATGTGACAGTTCGTTTGTGGAAGCCATGGTRGCTAGAGAGAATRAGATGTTCTTGGACAAAGAGCAGAGAGCAACAGAGAAATTGCAGAAGAACAAAAAAATTCCTACAAAAATGGTGGCGATTTCGTTGTACAGAGGAAACCTCCACAGAGTTCCCGACGTACCGCGTCGGTGGCTTATGCCAACCCCTAAGATTTCCCTCAAGGACTTCAAATCCCTTTTAACCCGCCGCTCTGTAGCTCTCTCCCGCCTCCGCTCCGCCCTCCCCGACGCCGCCTCCTCTAACCCTGACCCTGATTTTGTCCTGGACCAGCTCAACGAAGCTCCAAAGGCGGGAAATTTGTCTCACCCCACGATTAAATTTGAAGCGCCGGAGAATGTTGATGATGATTGCGCAGCTGGGCCGTCCGGGGAGAASAAGGATGGGAAGCAATCGGACGGTGCTGATTCTGCGGTGAAATCCGGCGGTGAGTCCGATTCGCCGCCTGCTCTTAAGCCYGATTTGATYGAGAAAGAGTCGGATGTTGCGGATGTTGGTGCGAGTTCACTGGCTGTGAAGGTTGATAAATTGGATGAAGTGGAAAACCCTAATTCTGAGAGATGCAACAAAGAGGAGGAGGAGGAGGAGTTAAGTGACAATCAAAAGAGGAAAAGAGAAGTTGAGGAGAAGCTGCAGGTTTTGAATCAAAAGAAACATAATCTAGTTCAAGTGTTGAAGCAGATCTTAAATGCAGAGGAGGAGTTAAAGAGACGAAATTCCATGCAAGGAGTGGTGGTTCGCCCKWCTGTATCACTTCAAGTGGATGTAACAAATGACTCCGGTTCAATGACTAGGCACGCTGCTGCTAGGKTGGGCTCGGAGGCAAACCTTGAGATGGAAGGGGTTGAGRGCGATGAGCTTTCAAATCATAACATTCAATCTCGCCATATGTTCCGGATGAACAGCACATCCCCATCTTCAGAGTCTCCTCTCAGAAGGCCAGCTCATATTCAGCACAATGTGGTTCCACACCCCTCTCGAGCAAGTTTAGGGGCAACCGGTACTAGTCCATCACGCTTTGCTCCCATAGGGCAACTGGGGCATCCTGCAAATCTACCCACGTTATCCGTATCAGGAACAAATTACATGGCATCCTCTCCGTCCCCTGCRGCATCTGGCGGCACTTCTGCTTTCAGAGAYGCTCGATTGCCAAGTCCATGGAATTAG
Protein Sequence:
- >MDP0000405669|Malus_domestica|MYB|MDP0000405669
MVXPACGDKLHVKXGTLLTAEEDAKILAHVSKXGPSNWTSVPKKTVFTGVTRCGKSCKLRWTNHLKSNLKHESFTPHEEELIVRLHATXGSRWPTIAQHLPGRTDNDVKNYWNTKLKKKLSEMGIDHVTHKPFSQILADYGNIGGVQKVGMRIGISSLNKDLRNAMRMKPAEPYSLPAQGFSNINSHLMPITMIPTKAEPILDSFLGHTQPGSQPPDLLTQLEAIXLVTEAFKSTESQSSAPNFYSHEGTLXSSSSTSSATQEQATLQAFSWXDFLLEDAXMPIGDAQEHEXKAEYSSNSKDQAQVAIQQSQIDMDYAISXNEVEATSAACDSSFVEAMVARENXMFLDKEQRATEKLQKNKKIPTKMVAISLYRGNLHRVPDVPRRWLMPTPKISLKDFKSLLTRRSVALSRLRSALPDAASSNPDPDFVLDQLNEAPKAGNLSHPTIKFEAPENVDDDCAAGPSGEXKDGKQSDGADSAVKSGGESDSPPALKPDLIEKESDVADVGASSLAVKVDKLDEVENPNSERCNKEEEEEELSDNQKRKREVEEKLQVLNQKKHNLVQVLKQILNAEEELKRRNSMQGVVVRPXVSLQVDVTNDSGSMTRHAAARXGSEANLEMEGVEXDELSNHNIQSRHMFRMNSTSPSSESPLRRPAHIQHNVVPHPSRASLGATGTSPSRFAPIGQLGHPANLPTLSVSGTNYMASSPSPAASGGTSAFRDARLPSPWN*