Gene Details:

  • Gene ID: LOC_Os01g18240.1
  • Gene Name: LOC4327914, Os01g0285300, OsJ_01345, OSJNBa0004B13.27, OSNPB_010285300, P0498A12.22
  • Gene Family: MYB Family
  • Description: MYB Family protein
  • Species: Oryza sativa subsp. japonica
  • Source: MYB family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_015627109.1  — transcription factor MYB61
  • TrEMBL:  A0A0E0FK98  — A0A0E0FK98_ORYNI; Uncharacterized protein
  • TrEMBL:  A0A0E0MUU7  — A0A0E0MUU7_ORYRU; Uncharacterized protein
  • TrEMBL:  A2WNL4  — A2WNL4_ORYSI; Uncharacterized protein
  • TrEMBL:  Q9AQV2  — Q9AQV2_ORYSJ; Os01g0285300 protein
  • STRING:  ORUFI01G12800.1  — (Oryza rufipogon)
  • STRING:  OS01T0285300-01  — (Oryza sativa)
  • STRING:  ONIVA01G14120.1  — (Oryza nivara)

Gene Ontology:

  • GO:0003677  — Molecular Function — DNA binding

Family Introduction:

  • MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
  • In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.

Literature:

Sequences:

CDS Sequence:
  • >LOC_Os01g18240.1|Oryza_sativa_subsp._japonica|MYB|LOC_Os01g18240.1
    ATGGGGAGACATTCCTGCTGCTACAAGCAGAAGCTGAGGAAGGGGCTCTGGTCACCTGAGGAGGATGAGAAGCTCATGAACCACATAACCAAGCATGGCCATGGCTGCTGGAGCACCGTTCCAAAACTTGCAGGGCTTCAGAGATGTGGCAAAAGCTGCAGGCTGAGATGGATAAACTACTTGAGGCCTGACCTAAAGAGAGGTGCATTCTCTCAGGAGGAAGAGGACCTCATCGTTGAGCTCCATGCTGTTCTGGGAAACAGGTGGTCTCAAATTGCAACACGGCTGCCTGGAAGAACTGACAATGAGATCAAGAATCTCTGGAATTCATGCATCAAGAAGAAGCTGCGGCAGAAAGGCATTGACCCAAACACCCACAAGCCCCTTGCCGAGGTTGATCGAAGCAAAGCAACTCCCACCATCAGCAATGACAGGACCTCTGAATCCAGCGATGTTGACCCATCTAGTGGCGTTGCTCTTCACAACTTGAGCCATCTTCTGAGCGAGACGGCGCAATCATCAGAGCTGCTGCCAGTGAAGGTAACTAAACCTCGCACACAAGCTCCGGGCTTGGCACGTCTGAAGGTGCCACCGAAGGAACTATTTCTAGACCAGCTTACTTCTGGCCATGAGAACCTCCCTAGCTGCCGTTCATCTGGCCCAATTCCCAATTTCCCGTTCCAGCAGCTGTTGTGCTACAATAATGATTTTAACAGCATGGACGTTGGAAACAGGAATTCACTCTGGTATAACCAGAATGAGTCCAGTAGCAGCACAATTTCCACTGTGATGCCCCCAGTTTCACCATCAACTCTCTCGACATCAACAGGCCTTAATCCATCACCAGACAATGCAAACTCTCGAGGCACTGGCATCCACAATTCCCAATTCTATTGGGACACCAACAATCCTAGCAGCAGTAGCAGTACAGGGAGTAGTGGTAACAACGGGTTGGGATTCGAGCTGCAAAGCACAAGCTCCCTTTTGGAGACCAACATATTCCCATGGTCAGATTTAGCACCAGAAAAGGATAGCCAAGCACAACTAGAGGAAGAACTCAAGTGGCCTGACTTGCTCCATGGAACGTTCTCAGAGATGCCAGCGCCCATGCAGAACCTTAGCCAGTCACTGTATGAAGACGTTGTCAAAGCAGAGAGCCAATTCAACATGGAGGGGCTCTGTGCAGCTTGGTCTCAAAACCTGCTGCCACAGCAACATCTTCCAGTAGTATCAGATATGTATGACAAGGATTTGCAAAGGATGTCCTTGTCTTTTGAGAATATCTAG
Protein Sequence:
  • >LOC_Os01g18240.1|Oryza_sativa_subsp._japonica|MYB|LOC_Os01g18240.1
    MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSTVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQEEEDLIVELHAVLGNRWSQIATRLPGRTDNEIKNLWNSCIKKKLRQKGIDPNTHKPLAEVDRSKATPTISNDRTSESSDVDPSSGVALHNLSHLLSETAQSSELLPVKVTKPRTQAPGLARLKVPPKELFLDQLTSGHENLPSCRSSGPIPNFPFQQLLCYNNDFNSMDVGNRNSLWYNQNESSSSTISTVMPPVSPSTLSTSTGLNPSPDNANSRGTGIHNSQFYWDTNNPSSSSSTGSSGNNGLGFELQSTSSLLETNIFPWSDLAPEKDSQAQLEEELKWPDLLHGTFSEMPAPMQNLSQSLYEDVVKAESQFNMEGLCAAWSQNLLPQQHLPVVSDMYDKDLQRMSLSFENI*