Information report for Kalax.0469s0007.2.p
Gene Details
|
|
Functional Annotation
- Refseq: XP_002278062.2 — PREDICTED: snRNA-activating protein complex subunit 4 isoform X2
- Refseq: XP_027123428.1 — snRNA-activating protein complex subunit 4 homolog, partial
- Refseq: XP_027123429.1 — snRNA-activating protein complex subunit 4 homolog, partial
- TrEMBL: A0A068TQ56 — A0A068TQ56_COFCA; Uncharacterized protein
- TrEMBL: A0A2G9HYB1 — A0A2G9HYB1_9LAMI; Uncharacterized protein
- STRING: XP_010243797.1 — (Nelumbo nucifera)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g001409m
- Manihot esculenta: Manes.14G168800.2.p, Manes.14G168800.1.p
- Nicotiana tabacum: XP_016461325.1, XP_016461324.1
- Populus trichocarpa: Potri.015G041500.3, Potri.015G041500.1, Potri.015G041500.2
- Prunus persica: Prupe.5G230100.2.p
- Sesamum indicum: XP_011084456.1, SIN_1010959
- Vitis vinifera: GSVIVT01008395001
Sequences
CDS Sequence:
- >Kalax.0469s0007.2.p|Kalanchoe_marnieriana|MYB|Kalax.0469s0007.2.p
ATGCATGAACCCACGCTGCTTCCAGTCAAGGGTTCAGGTTTCCCTAGGCCCGCCCAGCTTCTTTTAGATTCTATCAAGAAGAACAGATTGTGCCAAAAGCTCATTCATAATAGGCTCGTACAGATTGAAGCACGGATTGAGGAGAGCAAGAAGCTGAAAGATCGTGTTAAGATACTAAAGGACTTTCAGGTGTCGACCAGAAAAAGAGTTGGATTAGTTCTATCTCAAAAGAAGGATCATCGTGTACAGCTAATTTCAGCTCCTAAGAGAGGTGAAAAGAAGGCGTCTGCTATGAAATTTGGACCTGAAGACAATAGAGATGTTGCCTTTTACAAGGATGCTATAACGAAATTTCCACTCGCTTTGCAGCGTCAAAGGTGGACAAATGAAGAAAGAGATAACCTGAGGAAGGGTATTAAACAAGAGTTTCAGAAGGCTCTGCTTGAAAAGTCTGTGGATTTGATAAGTTACTCAGAAGGATCTTATGGGATCTCCAGTGACATTGACAATGTGATGGCTTCGATCAAGGGTCTGGAAATCACTCCGGAAAACATCAGAGCATATCTTCCCAAGGTTAACTGGGATAACTTTGCTTCCATCTATCACCAAGGGCGTTCTGGTGCAGAATGTGAAGCAAGGTGGTTGAACTGGGAGGATCCTTTAAGAAATAATACCAGATGGACTAGAACTGAGGATAAGGAACTTCTGCTTATTGTCAAAGAAAAGGAAATGAGTAACTGGATTGACATTGCAGTATCACTGGGAACAAATAGAACACCCTTTCAGTGCTTGGCTCGGTTTCAAAGAAGTTTAAATGCTCAAATGGTTAAAAGGGAATGGGAAGAAGAAGAAGATTTTCGTCTTTGTGCGGCTGTAAGAGTTTTTGGTGAAAGTAATTGGCAGATGGTGGCCTCTGTATTAGATAAGAGGACGGGTACTCAATGTTCCAATAGATGGAAGAAGTCACTCAACCCAGCAAGAGTAAGAGTAGGAAGATGGACAATTGATGAGGACAAACGCATGAAAGTATCAGTAAAACTCTTTGGGGCGAAGTGCTGGAGTAAAATAGCTCAGTTTGTGCCTGGACGGACTCAAGTGCAGTGCAGGGAAAGATGGGTTAATTGCTTGGACCCTTCTTTAAATTGGGATCCGTGGACTGAAGATGAAGACTTGAAGTTGATGACCGCAATTACGGAATATAATTACTGCTGGTCAAAGGTTGCAGCATGCATTCCTCCACGGACTGACAATCAGTGCAGAAGGAGATGGATGGTACTGTGTCCTGATGATGTCTATAGGCTTCAAGCAGCCAAGAAAATACAGCAGGTTGCTCTTATATCCAACTTTGTTGACAGGGAGACTGAGCGGCCTGATCTTGGGCCAGAAGATTTTGTGCCACCACTAATTTTATGCCCAGCTTTTGAACCCTATAGTGAGGAACCTACAAATAAGAGGAAAAGGAAGCGTCGCGAGAAGCGAGCATCTCCAATGAACAATGCGGAGTACAATATGGGTTGTAGCGATTCTCAAAAAAAGAAAAGATGTCCAAGACGTAGAAAAGAAGCTCAAGTAGACAATGAGGCAACTTTAGGTGCGGTTGATGTCAATGAAGCCACTGAAGCGTTCATTTGCCTCAATGAATATGTTGGTACTGTAGAAAATTCAACTATTGTACACCCAGGATCATTTGAGTGCAATGAACAAGGAAAAGCGGACTCATCTTTATATCTTGAATTGGAACCGACAGACACTGGCGATGAAGGAAAGTGTGGCCGAAGTAATTATCTCAAGAGAAAAAAATACAAGCCACGTAGAAAAGCGCGAGCTGAGAATGTACCTGTTCAAAGCAAGGCTTTTTTGCCTGCTGCTCAAAGTGAGTCTATGCTGATGAACCATTCATTCAGTCACGAGATTCCTGTGGAGAATAACACAACCTCAACCCAAAAGAGAAGGACCACGATCAAGCAAAATAAGAAGAAATCTTGCTCCATCTATAAGAAAAATGACTATGAATTTGCTGCTGGGACTCTGTCGCTCCAGATGCAAACTCCTGACAAATCAGCAAGTATTCCTGGTGCAATTGTGGCAACTAGCAAAAGCTGTAAAAGAGAGAGAGTTAAAGCTTCAAGCTCTTTAAAGGATGCCGTCAGTTTCCACAGACCATCATCATGTTCATGTTGTCTTGAAAGTATTGTTTGTCATCAGGGAGCAGTGAATGGCACAAGAGTGAATGGTGAGCTTATTGCTGGGAAAGCTGCTGCTTGCTTGGAAGAGAATGATTTTATTCCACTTGCTTCTCTCGGTAAGAGAGACAAAAATTTCTCTCAAAATGAAGCTGAATATGCCCAGGAAGCAAATAGCAGGTCGGAAATGAATAACAAATTTTGTTGTGAGCAACCCGCAACTAGTTTGGGCAAGGATGACAGTCTTGCGCTAACTTCTTTTATTAAGAGGAAGAGAAATGTGTGTAACGCGAGGATTGAGAATGGGCACAATGTGGACAAAGGGAGAAAAATGGAAATAATTTCTGTTGAGCAGGTGGGAGCTGGTCTGAATGAGGATGATATTCCTCTTGCTTTGTTCATTAAGAAAGTTAAAAGAGTCAAGGAAAAAATATGA
Protein Sequence:
- >Kalax.0469s0007.2.p|Kalanchoe_marnieriana|MYB|Kalax.0469s0007.2.p
MHEPTLLPVKGSGFPRPAQLLLDSIKKNRLCQKLIHNRLVQIEARIEESKKLKDRVKILKDFQVSTRKRVGLVLSQKKDHRVQLISAPKRGEKKASAMKFGPEDNRDVAFYKDAITKFPLALQRQRWTNEERDNLRKGIKQEFQKALLEKSVDLISYSEGSYGISSDIDNVMASIKGLEITPENIRAYLPKVNWDNFASIYHQGRSGAECEARWLNWEDPLRNNTRWTRTEDKELLLIVKEKEMSNWIDIAVSLGTNRTPFQCLARFQRSLNAQMVKREWEEEEDFRLCAAVRVFGESNWQMVASVLDKRTGTQCSNRWKKSLNPARVRVGRWTIDEDKRMKVSVKLFGAKCWSKIAQFVPGRTQVQCRERWVNCLDPSLNWDPWTEDEDLKLMTAITEYNYCWSKVAACIPPRTDNQCRRRWMVLCPDDVYRLQAAKKIQQVALISNFVDRETERPDLGPEDFVPPLILCPAFEPYSEEPTNKRKRKRREKRASPMNNAEYNMGCSDSQKKKRCPRRRKEAQVDNEATLGAVDVNEATEAFICLNEYVGTVENSTIVHPGSFECNEQGKADSSLYLELEPTDTGDEGKCGRSNYLKRKKYKPRRKARAENVPVQSKAFLPAAQSESMLMNHSFSHEIPVENNTTSTQKRRTTIKQNKKKSCSIYKKNDYEFAAGTLSLQMQTPDKSASIPGAIVATSKSCKRERVKASSSLKDAVSFHRPSSCSCCLESIVCHQGAVNGTRVNGELIAGKAAACLEENDFIPLASLGKRDKNFSQNEAEYAQEANSRSEMNNKFCCEQPATSLGKDDSLALTSFIKRKRNVCNARIENGHNVDKGRKMEIISVEQVGAGLNEDDIPLALFIKKVKRVKEKI*