Information report for IGS.gm_5_00439
Gene Details
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Functional Annotation
- Refseq: XP_005849877.1 — hypothetical protein CHLNCDRAFT_143110
- TrEMBL: E1Z9H0 — E1Z9H0_CHLVA; Uncharacterized protein
- STRING: XP_005849877.1 — (Chlorella variabilis)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Cicer arietinum: XP_004512740.1, XP_004512739.1, XP_012574716.1, XP_012574717.1
- Citrus sinensis: orange1.1g001409m
- Medicago truncatula: Medtr6g080360.1, Medtr6g080360.2
Sequences
CDS Sequence:
- >IGS.gm_5_00439|Chlorella_variabilis_NC64A|MYB|IGS.gm_5_00439
ATGGCGGACGGCAGCAGCTCGGACGACGATGAGTTGGAGCTGGCCGACTTGGAGGGCCTGCGGCTGGAGCTGGAGGCGCTGCGGCAGGAGCTGGGGGACGGCTTCGTTGCGTACCAAGACCCCGGCGAGGAGCTGGACGAGTCCGACGCCGAGGAGGACGAGGCGCCACCGCTGCCGGGCGCCGCGTCGTCGGCAGCCGCTCCGCCTCCCTCAACCCTGCAGCCCGCTTGCCAGGCAGACAGGGAAACGGTAGCTGAGGAGAGCGAGGAAGATGAGGACGAGGGCGAGGCAGGAGGTGCACAAGATGATGCGGAGGAGGAGGAGCTCTGGCAGCGGCGTGAAGCGACGGCCGAGGAGCAGCAGCAGCGGCGTGAAGCGGAGGAAGAGAGGCGGCACGAGCGGCAGGACGAGGCAGACGAGCGCCAGCAGGCCGTGCAGCACGTGGCCGCTGCTCTGCAGCACCCACAGGCAGCCGGGACGGGGCCCAGGAGAGTGTACAACCGTCAGGTGCTGGTTCCTGCACCGACGCCTGTGGCGCCGCAGCAGGAGCAGAAGAAGAAGAAGCCCCACCAACAGCAGCAGAAGCAGCCACAGCCACAGCAGCAACAGAAGAAGCAGCCGCAGCAACAGAAGCAACAGAAGCACCTGCAGCAACAGCAGCAAAAGAAGCACATGCAGCAACAGCAGCAAAAGAAGCAGCAGCAGCAGAAGAAGGCCAAGCTGCATGTGGTGCTGGGCAGCAAGGCATCCAAGGCAGCCGCTGGGGCTGGCAAGAAGCAGCAGGGCAAGGCGACCCACGCGACGCGGCAGCGCAAGAGCAAGCCCGCTGCCGAGGACGAGGAGGGCGCGCCTGAGCCGCGGCCAGCGGCAGAGGCCGAAGAGAGGACAGAGGAGGCACCGCCGGCCAGCAAGCTGCAGACGATCCGGGATGCGCTGGAGGCAAACCTCCAGCTGCAGGGGAGGCTGCGCCGCCTGCTGGCATCCACCGACCGTGCCATCGACCGCAACGCCGCCGTCCTGCTGCAGGTACGGTCGCTGAAAGCCAAGAAGAGCGCCCCCCCCGCCGTGGCCACAGTGGCAGCCAGCGCGGAGCCAGCTCAGCTGCAGGCCCCCATTGGCACCAGCTGGTTCTGGGGCGGCAGCGCCGGGGCAGGCGGCCAGGGGGTGCCGCCCAACCCTGATGCCCAAGCGCTGCTGCCGCTGTACAGCCACCTGCCCTTCAGGCAAGCGCTGGCGGCCTGCCGCAGCTTCCGCGGCGCCCGGTGGAGCGAGGAGGAGCAGCAGCGGCTGCGGGACGGCGTGGTGCAGCTGGTGCAGGAGTTCCAGCTGCAGGATGTGATGCAGGAGATGCAGCAGCGGCTGGAGAGCGGCGGCGCCGTCGGCATGGCAGACTACGAGGCCAGCCGCCAGCGCATCGCGGCGCTCACCCTGCACTCGCCAGGCACGCCGCAGGGCGAGGTCGTGGACCAGCTGGCCGCCGGGTTCCGCGAGGAGGATTGGGCCACCCTTGTGCAGCGCTCCCGCCTGCACCGCACCACCACCGAGTGCCGCCTGCAGTGGACCAACAGCCTGGCGCCCAGCCTGAGCCAGCGGGAGTGGACTGCGCAGGAGGACCAGCAGCTGCGGCTCCTGGCTGAGCAGCACAACGCGCGCGAGTGGGAGGCGGTGAGCCGTGAGCTGGCGGCCGCCACGGGCGGCGGCACGCGCCCGCCGCTGGCCTGCCTGCAGCGCCACCAGCTGCTGGCGGCCGCGGCGGCCAAGGAGGGGGTCAAGTTTGAGGCGGGCGAGGACATGGCACGCCTGACGCAGCTGGTGGCCAAGCACGGCAGCGCCTGGAAGAGAATCGCCGAGGAGTTTGCGGGCGGCTTTGACCCCGACCAGCTCATGCACATCTGGCGGCGCCACGCGCAGCGCGGCCCCGTGGCCCGCAAGGGCAAGTGGGCGCAGGAGGAGGATGAGGCCCTGCTCAAGGCCATGGCGCTGCACGGGCGCAAGTGGTCGCTGGTGGCGCGCCTGGTGCCGGGGCGCACCGACGTGCAGTGCCGCGAGCGGTACATCAATGTGCTGGACCCAGGCGTGGCCACCTACCGTCCCTGGAACGGGGAGAGCGACCGGCGCCTGCTGGCCCTGGCCACCCAGCACACACAGCCCGACGGCAAGATAAAGTGGTCTGCGGTGGCTGCGGGCCTGCCGGGCCGCACCGACAAGCAGTGCTCGATACGGTACAAGGCGCTGACCAGCGGGGAGTCTGGCGGTAAGGAGCGCAAGCCTCGCAAGCGGGCCAAGGAGGGCGGCGGCGGCGGTGGCCGTGGCGGCAAGCAGCGGCGCACGGCCGCCGCCGCCGACGGCGGGGAGGGCCCCAGTGCCGAGGGTGGCGGCGAGGAGGGCGGCACCGGAGAGGGCGGCGAGGCCAGCCCCCCGGGCGAGGGTGGTGCGCTTCGCTTGCGGCGCACGCGGCGGCGGCCCGCCCGGCTGGCCTCTCCTGAAGCCGACGAAGAGGAGCGGGAGGGGCAGAGGGCGCAGCAGCCTGAGGAGGCCGTGGTGGCAGTGGAGGAGCCTAAGCAGCAGCAGCAGCAGCTGCAGGAGCAGCAGCAGGAGCAGCAGGAGCAGCAGCAGGAGCAGCAACCAATGGATGTGGATGGGCTGGGGGCGGTGCAGGATGTGCAGCAGCAGCAGCAGGTCCGGCAGCCCCACCGGCAGCACCAGCAAACGCAGGACGAGAAGCAGCGGCAGCCCGCCAAGAAGCAGCGCGGGCGAGCCGGTGCGGGCGCAGGGGAAGGGCAGGGGGCGGCGGCCCAGCCCTCGGCGGCGGCCCAGCCTCCTTTGGCCGCAGACGTGACCGCCGCGCTTGGCTGCCAAAAGACGGAGGAGCCAGCGCTGCTGCCCGCGCCTCCGCCAGCCACGGCCTCGGTGCTCCCCTTTGCTCCCGCCGCCGCTGTGGGGCAGGTGGCGGCGTGGTGA
Protein Sequence:
- >IGS.gm_5_00439|Chlorella_variabilis_NC64A|MYB|IGS.gm_5_00439
MADGSSSDDDELELADLEGLRLELEALRQELGDGFVAYQDPGEELDESDAEEDEAPPLPGAASSAAAPPPSTLQPACQADRETVAEESEEDEDEGEAGGAQDDAEEEELWQRREATAEEQQQRREAEEERRHERQDEADERQQAVQHVAAALQHPQAAGTGPRRVYNRQVLVPAPTPVAPQQEQKKKKPHQQQQKQPQPQQQQKKQPQQQKQQKHLQQQQQKKHMQQQQQKKQQQQKKAKLHVVLGSKASKAAAGAGKKQQGKATHATRQRKSKPAAEDEEGAPEPRPAAEAEERTEEAPPASKLQTIRDALEANLQLQGRLRRLLASTDRAIDRNAAVLLQVRSLKAKKSAPPAVATVAASAEPAQLQAPIGTSWFWGGSAGAGGQGVPPNPDAQALLPLYSHLPFRQALAACRSFRGARWSEEEQQRLRDGVVQLVQEFQLQDVMQEMQQRLESGGAVGMADYEASRQRIAALTLHSPGTPQGEVVDQLAAGFREEDWATLVQRSRLHRTTTECRLQWTNSLAPSLSQREWTAQEDQQLRLLAEQHNAREWEAVSRELAAATGGGTRPPLACLQRHQLLAAAAAKEGVKFEAGEDMARLTQLVAKHGSAWKRIAEEFAGGFDPDQLMHIWRRHAQRGPVARKGKWAQEEDEALLKAMALHGRKWSLVARLVPGRTDVQCRERYINVLDPGVATYRPWNGESDRRLLALATQHTQPDGKIKWSAVAAGLPGRTDKQCSIRYKALTSGESGGKERKPRKRAKEGGGGGGRGGKQRRTAAAADGGEGPSAEGGGEEGGTGEGGEASPPGEGGALRLRRTRRRPARLASPEADEEEREGQRAQQPEEAVVAVEEPKQQQQQLQEQQQEQQEQQQEQQPMDVDGLGAVQDVQQQQQVRQPHRQHQQTQDEKQRQPAKKQRGRAGAGAGEGQGAAAQPSAAAQPPLAADVTAALGCQKTEEPALLPAPPPATASVLPFAPAAAVGQVAAW*