Information report for GSBRNA2T00152674001
Gene Details
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Functional Annotation
- Refseq: XP_013636516.1 — PREDICTED: transcription factor AS1
- Refseq: XP_013636517.1 — PREDICTED: transcription factor AS1
- Refseq: XP_013692331.1 — transcription factor AS1
- Refseq: XP_022557987.1 — transcription factor AS1
- Swissprot: O80931 — AS1_ARATH; Transcription factor AS1
- TrEMBL: A0A0D3BR58 — A0A0D3BR58_BRAOL; Uncharacterized protein
- TrEMBL: A0A3P6BI65 — A0A3P6BI65_BRAOL; Uncharacterized protein
- STRING: Bo4g030340.1 — (Brassica oleracea)
- GO:0008356 — Biological Process — asymmetric cell division
- GO:0009615 — Biological Process — response to virus
- GO:0009651 — Biological Process — response to salt stress
- GO:0009733 — Biological Process — response to auxin
- GO:0009739 — Biological Process — response to gibberellin
- GO:0009751 — Biological Process — response to salicylic acid
- GO:0009753 — Biological Process — response to jasmonic acid
- GO:0009944 — Biological Process — polarity specification of adaxial/abaxial axis
- GO:0010338 — Biological Process — leaf formation
- GO:0042742 — Biological Process — defense response to bacterium
- GO:0045088 — Biological Process — regulation of innate immune response
- GO:0045892 — Biological Process — negative regulation of transcription, DNA-templated
- GO:0046686 — Biological Process — response to cadmium ion
- GO:0050832 — Biological Process — defense response to fungus
- GO:0000793 — Cellular Component — condensed chromosome
- GO:0005730 — Cellular Component — nucleolus
- GO:0003677 — Molecular Function — DNA binding
- GO:0042803 — Molecular Function — protein homodimerization activity
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Brassica oleracea: XP_013636517.1, XP_013636516.1, Bo4g030340, XP_013629516.1, Bo3g031880
- Brassica rapa: XP_009143469.1, XP_009143468.1, Bra005177, XP_009133196.1, Bra000011
- Raphanus raphanistrum: RrC8766_p2
Sequences
CDS Sequence:
- >GSBRNA2T00152674001|Brassica_napus|MYB|GSBRNA2T00152674001
ATGAAGGAGAGGCAACGTTGGAGTGGTGAAGAGGATGCATTGTTACGTGCCTACGTGAGACAGTTCGGTCCGAGAGAATGGCATCTTGTCTCTGAGCGTATGAACAAGCCTCTGAACCGTGACGCAAAGTCTTGTCTCGAACGGTGGAAGAACTATCTTAAGCCAGGGATCAAGAAAGGGTCATTGACAGAGGAAGAGCAGAGGCTCGTGATCCGTTTACAGGAGAAACACGGCAACAAGTGGAAGAAGATCGCCGCGGAGGTTCCAGGGAGGACGGCGAAGCGGCTAGGGAAGTGGTGGGAAGTGTTCAAGGAGAAGCAGCAGAGAGAAGAGAAAGAGAGTAACAAGAGAGTCGAGCCTATTGACGAGAGTAAGTACGATAGGATCCTCGAGAGTTTCGCTGAGAAGCTTGTGAAAGAGAGGTCCTCTGTTCCTGCGGTGATGGCTAGTTCAAACGGAGGGTTTCAACAAGCTCCTCCGCCTCCTAATAATAATCATGTGATCCCTCCTTGGTTAGCTACTTCTAACAACGGGAACAATGTTGTTGCAAGACCTCCCTCGGTGACTCTCACTCTATCGCCTTCAGTGGCTGCAACACCTCCTCAACAACCTATCCCATGGCTGCAGCAGCAGCAGCCTGAGGCCAGCCCGGGAGGTCTTGTGTTAGGGAGTATGATACCGTCTTGTAGCGGTAGTAATGAGAGTGTGTTCATGTCAGAGCTAGTGGAGTGTTGTAGAGAGCTGGAGGAAGGGCACAGAGCTTGGGCGGAGCATAAGAAGGAGGCGGCTTGGAGGCTAAGGAGATTAGAGCTGCAGCTAGAGTCAGAGAAGACAAGTAGACAAAGGGAGAAGGCAGAGGAGATTGAGGCAAAGATGAAGGCTCTGAGGGAAGAGCAGAAGATGGCGATGGAGAAGATTGAAGGAGAGTATAGAGAACAGCTTGTTGGTTTGAGGAGAGACGCCGAGGCCAAGGACCAGAAACTAGCTGATCAGTGGACATCTAAGCATATCAGGCTCACCAAGTTTCTTGAACAACACATTGGATGCAGGCAGAGACTATTAGACCGGCCCTGA
Protein Sequence:
- >GSBRNA2T00152674001|Brassica_napus|MYB|GSBRNA2T00152674001
MKERQRWSGEEDALLRAYVRQFGPREWHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREEKESNKRVEPIDESKYDRILESFAEKLVKERSSVPAVMASSNGGFQQAPPPPNNNHVIPPWLATSNNGNNVVARPPSVTLTLSPSVAATPPQQPIPWLQQQQPEASPGGLVLGSMIPSCSGSNESVFMSELVECCRELEEGHRAWAEHKKEAAWRLRRLELQLESEKTSRQREKAEEIEAKMKALREEQKMAMEKIEGEYREQLVGLRRDAEAKDQKLADQWTSKHIRLTKFLEQHIGCRQRLLDRP*