Information report for Cla007719
Gene Details
Functional Annotation
- Refseq: XP_008455362.1 — PREDICTED: transcription factor MYB39
- Swissprot: Q9LDR8 — MY102_ARATH; Transcription factor MYB102
- TrEMBL: A0A1S3C0Q7 — A0A1S3C0Q7_CUCME; transcription factor MYB39
- STRING: XP_008455362.1 — (Cucumis melo)
- GO:0009611 — Biological Process — response to wounding
- GO:0009651 — Biological Process — response to salt stress
- GO:0009737 — Biological Process — response to abscisic acid
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_13749
- Citrus sinensis: orange1.1g035629m
- Cucumis melo: MELO3C018773P1
- Cucumis sativus: Cucsa.148040.1
- Glycine max: Glyma.13G302400.1.p, Glyma.12G199600.1.p
- Gossypium arboreum: Cotton_A_30240_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A12G1244
- Juglans regia: WALNUT_00030938-RA, WALNUT_00028205-RA
- Manihot esculenta: Manes.16G019700.1.p, Manes.13G152600.1.p
- Populus trichocarpa: Potri.019G118200.1
- Pyrus bretschneideri: Pbr018024.1, Pbr011268.1, Pbr001520.1, Pbr000268.1
- Vitis vinifera: GSVIVT01000460001
Sequences
CDS Sequence:
- >Cla007719|Citrullus_lanatus|MYB|Cla007719
ATGGGAAGAGCTCCATGCTGTGATAAAAATGGGCTTAAGAAAGGTCCATGGACTCCTGAAGAAGATCAAAAGCTTGTTAATTATATTCAAGTTCATGGCCCTGGAAACTGGCGTAATCTTCCTAAAAATGCTGGACTTCAAAGATGTGGAAAAAGTTGTCGGCTTCGATGGACTAATTATCTGAGACCTGATATTAAGAGAGGGAGATTTTCTTTTGAAGAAGAAGAGACTATTATTCAATTGCATAGTGTTTTGGGAAACAAATGGTCAGCAATAGCTGCTCGCTTACCTGGAAGAACGGATAACGAGATCAAGAACTACTGGAACACCCACATAAGAAAAAGACTCCTTCGAATGGGAATCGACCCGGTGACCCACGCACCTCGGATTGATCTTCTCGACCTATCGTCGATTCTCTCTGCCGCCATCCGAAGCCACCCACTCCTTAGTCTCTCAACCTTATTGAACAACCACCAAACTACCACAACCCTAAACCCTGAATCTCTAAGGCTAATTTCCACTCTCTTAGGCCTGAAACAAGAAGACCCAAATGCCAATAATTTCCTTCTACAAGCTCAGGCTCAGGCTCAAGTTCAAGCTCAAATGGATTCATTATCACAGCTCTTACAGCCCAATGATAATGTTCATAATATAAATTCTTCTTCAATCCCCATTTCTACCTTTGTCGACTGCCCAAATTCTTCACAAGAAAATCTGAATTTTTTACCTTCCAATTTGAATGGTGAAGATGTTTTGCTGAACCAACCTAATTACGTGTATGGCGATAGTGGCTCCAACCCGACGGCTTCGGATTTTCTCGAAATTTCAAATAATAATGTTCAAAATTTAGGGTTTGATTCTGTAAAATCAAGCCCTACGCCGTTGAATTCTTCATCTACTTATATTAACAACAGCAGCAGCAGCAATGAGGACGAGAAAGATAGTTTTTGTAGTAACTTTTTGCACTTTGAAATTCCTGAAGGCTTGGATTTTGCTGATTTCATGTAA
Protein Sequence:
- >Cla007719|Citrullus_lanatus|MYB|Cla007719
MGRAPCCDKNGLKKGPWTPEEDQKLVNYIQVHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVLGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRIDLLDLSSILSAAIRSHPLLSLSTLLNNHQTTTTLNPESLRLISTLLGLKQEDPNANNFLLQAQAQAQVQAQMDSLSQLLQPNDNVHNINSSSIPISTFVDCPNSSQENLNFLPSNLNGEDVLLNQPNYVYGDSGSNPTASDFLEISNNNVQNLGFDSVKSSPTPLNSSSTYINNSSSSNEDEKDSFCSNFLHFEIPEGLDFADFM