Information report for AHYPO_001315-RA
Gene Details
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Functional Annotation
- Refseq: XP_021744139.1 — uncharacterized protein LOC110710184 isoform X1
- TrEMBL: A0A0K9QWA8 — A0A0K9QWA8_SPIOL; Uncharacterized protein
- STRING: XP_010669645.1 — (Beta vulgaris)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn202691, Achn153311
- Beta vulgaris: Bv2_036180_izat.t1
- Fragaria vesca: mrna23202.1-v1.0-hybrid
- Gossypium arboreum: Cotton_A_23417_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D10G2114, Gh_A13G0225, Gh_A10G1853
- Juglans regia: WALNUT_00007314-RA
- Lotus japonicus: Lj5g3v1839400.2, Lj5g3v1839400.1
- Malus domestica: MDP0000284572, MDP0000668138
- Populus trichocarpa: Potri.010G220000.4, Potri.010G220000.3, Potri.010G220000.1
- Pyrus bretschneideri: Pbr022051.1, Pbr023919.1
Sequences
CDS Sequence:
- >AHYPO_001315-RA|Amaranthus_hypochondriacus|MYB|AHYPO_001315-RA
ATGCCGCCGGCGCCATTGTCGTGTGATCGTAACCACTTGTTTAGAGATAGAATTTCTTCTTCCAGATGGAGAGATTCTTCTTCCTACTATGTTGGATCACGCAACTTTAACAACGATAACGATTTCTCCCCTCGTTGGGGTTTTCCCTCCTCTCACTTTCATTGTGCTCCTGGTCATGTTAAGCAGGGCGGATGGCATATGAACTATGAGGATCACGAGCACTCAACACATAGTTTTGGTGATCGATTTATGGATGATGATGTATTTAGACCGTATGGAATGCATGGAGATGGAAGATATGTTAAGTTTTATAGGGACAATCGTCCCTTCTATAGCCACAAAAATAGGAGAGACCATTCTTGGGAAGCCAATCACCACCACCATAGATCTCCATCAAATGGAGGAGGAAGGCCACGTATTGTTAATGATAAGAGATTAATTAGTGATTCATTTATGCGTATTTCCCATATGCGTTCTGATCCTTGTGATCAGTTTCAAAAAAGAGAGCAAACTGATAAACCGAGTGATGCTAATGGGTCTAGCATGGGCCATAAGGTTGATAAAAAGAATTTAATGGGGTCTTATGAATGGAAACCTCTTAAGAAGTCTCGTTCGAGAAGCTTAACTTCAAGAGGTTCTTTTTTTAGCCATACAAGTAGCTCTAAGGGTATCAAAGGAGAGTCATGTGATTTGCCCCCGAAGAATGCTACCCCTGTTCGATCAACATCTGGGGATGATGTTCCTTGTGTGGCCACTGTTGCTCCTTCCGAAGAACCATCTTCTAAGAAGCCACGTCTTGGATGGGGGCAAGGGCTGGCAAAATATGAGAAAAAGAAAGTTGAAGGCCCAGAAGAGAATGTAAACAAGGATGGTAATGCGGTGTTAGTTACTAATGTTGAACATTTGCATTCTTTCACCTCAAATCTAGTTGCCAAGAGTCCGAAGGTAAAGGATTTCTCTAATTGCTCATCACCTGCTACACCATCATCTTTTACCTGCAGCTCCTTACCAGGGCTGGAAGACAACTCATACGGGAAAGCTATTGATTTTGATGGCAATACTACCAAATTCAGTGTATCTTCGACGTCTGTGCCTGGGAGTCAACTTGATGGATCAAATTTCAGTCTTGATACAATGGAGCTGAACTCGATTACTAACTTGGGTTCCATGCTCACTGAATTGTTACAGGAAGATTATAAAAGCTCTATGGATACTAGTTTTACAAGATCCTCAGCTTTGAACAGACTGCTATTGTGGAAAGATGATATCGCAAAGGCATTAAAATTAACTGAAACTGAGATTGAGTCACTTGAAAATGAATTAGCATCATTGCAGGCTAATACTTCTAAAAGTCTCCAACTTCCTGCATTATCTGACTCAGGACTAAGTGATGGCGTAAATGTCTTGCATGTACCACAACTGTTGGTTTCAAACGGAGATATAATTCTGGAAAATAGACTTCCATGCGATGAAGCCAAAGGAGTAAAAGTGGATGTTAGGGATGAGGATATTGATAGCCCTGGTACTGCTACATCCAAATTTGTGGATCCTCCTGTTCAAAAGTTTGTCTCTCTCGAGTTGCACAAAACTTCTGTGGAGACTAGTACCAAAAGCACAATGGAGAATTTGGTTGCTTGTGAGGATGAGTCAGATGTGGGTACCTCTTGTCAGAGCTGTGATAAAAAGGTGATCCTAGATAGTGATGCCATATCTGGAATTGTGCAACCAAATGTGTGTGAAAAGGAAGAGGGTAATCTTTGTGATATAGTACTAGCTTCCAATAAGGAAACTGCTGATAGAGCTGCTGAATTTGTACTCAAGTTATTGCCTAGTTGTGATTATTCGTTGAAGCCTAATGGAGTATATTGTTTGCCTGCTGCTGATACTACAGTCAAAAAGAAGTTTCTAAACAGGAAGCGGTTTCTCAGGTTTAAAGAGAGAGTGATATCATCGAAATACAGGATACTTCATAACCTTTGGAAGGAGGACTTGCATTTGCGTTCTTTGAAAAGTTATCATGGAAAACCACACAAAAAACTAGATTTGAGCTCACGTTCACGGCAAATCAGGAGTCATAAACATAGGTCATCCACTCGTTCACCAGCTGGAAGTTTAAGTCTGGTTCCAACACCAGGGATAATTGATTTTACGGGCAAGCTAATTTCAGATTCCAAGGTGAAAGTTTATAGAAATAGTTTGAAGATGCCCGCTATGATCTTGGATGAGAAAGAGAAGATGTCCAGGATTTTGTTGAGTAATGGATTAGTTGAGGATCCGTGTGCAGTTGAGAAGGAAAGATCGTTGGTCAACTCATGGACTGCTGAAGATAAGAGAATCTTTATTGATAAGCTAGCTATTCACGGGAAAGATTTCCGCAAGATTGCGTCATTTTTTGATCAGAAGACCACGGCCGATTGCGTTGAGTTTTATTACAAGAATCATAAATTAGAATGCTTCAAGAAAATCAAGAAGCTAAAGGGGAAAAACCTAGGGAAACCTTTATCTTCAAGCACATATCTGGTGACGTCTGAAAAGAAATGGAGTAGGGAGATGAATGCTTCTTCCCTCGATATTTTGGGTGCTGCTTCAGTTATTGCAGCTCAAGCTGAACAGGCTTTGGAAACTCCAAAATCGCTATTAAGGAAGCCGAGCCACAGAAAGTCTAATGGATTAGATGGCATCAAGGATGCATCAAATCAGGACTGGAAGCAGCAAAAGACTGGTATTAAAATTAAGTGGCGTTGGACGCCAGAGGTCACACAAAATGTCGATGATTCCTGTTCAGATGAGGGCTGTGGAGAGTGGGACCCTGCTGACTGGACAGATAATGAGAAATCTTTGTTTGTGCAAGCTTTCTCATCCCATGGAAAGGATTTTTCGTTGATATCTCAATGCGTCAAGACAAAGTCCATAGATCAATGCAAAGTCTTCTTCAGTAAGGTGCGGAAGTGCCTTGGTCTAGACACTATACTCTTTGCATCTGGGATTGGAGAAATTCATTCTAACAATGGCACAAACCGGACAGGGACTAATAATGAAGATGCTGGTATTGCCGAGACAGATTCTGTTTTCTGCACTGACAAATCAGGTTGTAGAATAGATGAAGATCTGCTGCGTGTTAACTCAGATGTGTCGATGCCTGAAGCTTATCCTGAATTGGAAGAAAATTGTGGTCTAGGACAGTTGGATCATAAATATGGTTGTTTGGAAGATGATGACTTGCTTCCAAATGCTGATTTTCCAGATGTCTCAGATCCGAGAATGTTCCAATTAGTAATTATGGCATTTGGGATGGAACCAAGATACAGACAGACTTTTCAACATTGCCAGATTCAGCTTTTGCTCATGGCCAAGTATCCAACTGCTTTTGCCAACCACCCAATTTCCCTGCGGAAATTAAAACAGCAGTCAGTGCAAGTAACAGCCATGAGAAATGGTAATGATTGCAATATGAACAGTGCTCGTGTCTTCTCACCAAGGGAATCCAGCAGCAGCAACGGGAGTGTTGTGGATTACCGCAGCAGTGCAAGGGCATAG
Protein Sequence:
- >AHYPO_001315-RA|Amaranthus_hypochondriacus|MYB|AHYPO_001315-RA
MPPAPLSCDRNHLFRDRISSSRWRDSSSYYVGSRNFNNDNDFSPRWGFPSSHFHCAPGHVKQGGWHMNYEDHEHSTHSFGDRFMDDDVFRPYGMHGDGRYVKFYRDNRPFYSHKNRRDHSWEANHHHHRSPSNGGGRPRIVNDKRLISDSFMRISHMRSDPCDQFQKREQTDKPSDANGSSMGHKVDKKNLMGSYEWKPLKKSRSRSLTSRGSFFSHTSSSKGIKGESCDLPPKNATPVRSTSGDDVPCVATVAPSEEPSSKKPRLGWGQGLAKYEKKKVEGPEENVNKDGNAVLVTNVEHLHSFTSNLVAKSPKVKDFSNCSSPATPSSFTCSSLPGLEDNSYGKAIDFDGNTTKFSVSSTSVPGSQLDGSNFSLDTMELNSITNLGSMLTELLQEDYKSSMDTSFTRSSALNRLLLWKDDIAKALKLTETEIESLENELASLQANTSKSLQLPALSDSGLSDGVNVLHVPQLLVSNGDIILENRLPCDEAKGVKVDVRDEDIDSPGTATSKFVDPPVQKFVSLELHKTSVETSTKSTMENLVACEDESDVGTSCQSCDKKVILDSDAISGIVQPNVCEKEEGNLCDIVLASNKETADRAAEFVLKLLPSCDYSLKPNGVYCLPAADTTVKKKFLNRKRFLRFKERVISSKYRILHNLWKEDLHLRSLKSYHGKPHKKLDLSSRSRQIRSHKHRSSTRSPAGSLSLVPTPGIIDFTGKLISDSKVKVYRNSLKMPAMILDEKEKMSRILLSNGLVEDPCAVEKERSLVNSWTAEDKRIFIDKLAIHGKDFRKIASFFDQKTTADCVEFYYKNHKLECFKKIKKLKGKNLGKPLSSSTYLVTSEKKWSREMNASSLDILGAASVIAAQAEQALETPKSLLRKPSHRKSNGLDGIKDASNQDWKQQKTGIKIKWRWTPEVTQNVDDSCSDEGCGEWDPADWTDNEKSLFVQAFSSHGKDFSLISQCVKTKSIDQCKVFFSKVRKCLGLDTILFASGIGEIHSNNGTNRTGTNNEDAGIAETDSVFCTDKSGCRIDEDLLRVNSDVSMPEAYPELEENCGLGQLDHKYGCLEDDDLLPNADFPDVSDPRMFQLVIMAFGMEPRYRQTFQHCQIQLLLMAKYPTAFANHPISLRKLKQQSVQVTAMRNGNDCNMNSARVFSPRESSSSNGSVVDYRSSARA*