Information report for Achn358581
Gene Details
|
|
Functional Annotation
- Refseq: XP_028061091.1 — transcription factor LAF1-like
- TrEMBL: A0A2R6PN01 — A0A2R6PN01_ACTCH; Transcription factor like
- STRING: PGSC0003DMT400037080 — (Solanum tuberosum)
- GO:0006378 — Biological Process — mRNA polyadenylation
- GO:0005849 — Cellular Component — mRNA cleavage factor complex
- GO:0003677 — Molecular Function — DNA binding
- GO:0003729 — Molecular Function — mRNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Capsicum annuum: CA07g03650
- Cicer arietinum: XP_004496837.1
- Citrus sinensis: orange1.1g045400m
- Gossypium hirsutum: Gh_D12G2468
- Nicotiana benthamiana: Niben101Scf02910g01031.1, Niben101Scf04804g01016.1
- Nicotiana tabacum: XP_016442378.1, XP_016471228.1, XP_016501612.1
- Prunus mume: XP_008234256.1
- Prunus persica: Prupe.2G293700.1.p
- Solanum lycopersicum: Solyc03g025870.2.1
- Solanum melongena: Sme2.5_03714.1_g00001.1
- Solanum tuberosum: PGSC0003DMP400025180
- Vitis vinifera: GSVIVT01028984001
- Ziziphus jujuba: XP_015878099.1, XP_015878037.1
Sequences
CDS Sequence:
- >Achn358581|Actinidia_chinensis|MYB|Achn358581
ATGAAAGAAATGGGAATGATGGAATTGATCAATGATGATAGGGGCGATAGCCTGATAGGTGATAATACTAGAGATCAACACTATGATCGAATGGTGCAGGAGCATAATCATCCCCATATTCTTCTTTTGCAAATTGGGAACACATTTTGCAAACTTCCTGGTGGGCGCTTGAAGCCTGGGGAGAATGAGATTGAAGGTTTGAAAAGAAAACTAAACAGCAAACTTGGTGCAAATTCACCCACTCTGCAGCCGGATTGGCAGGAATGTAAGAAGCTTTACGTTGTGCACCTTTCTGAAAGAGAGTACTTTGCTGTGCCAAAAAACTTGAAACTTCTTGCTGTTCCGTTGTTTGAACTCTATGATAATGTTCAGTCGTCGTCGAGTTTGACAATTTCTTGTTTGTCTGGAAAAATGAGGTGCAATAAGCCAGTGGAAAAGCCAAAGCACAAGCACCACAAGGGGTTGTGGTCGCCGGACGAAGACCAAAGGCTCAGAAACTACATCCTCAGGCATGGTCATGGCCGCTGGACCTCTGTCCCCGTCAATGCCGGGTTGCAAAGGAATGGGAAGAGCTGCAGGCTAAGGTGGATTAATTACTTGAGGCCAGGACTAAAGAGAGGGATGTTCACTTCACAAGAGGAGGAAACAGTCCTCACGCTTCATGTCATGTTGGGCAACAAGTGGTCTCAGATAGCTCATCACTTTCCTGGACGAACTGACAACGAGATAAAGAACTATTGGCACTCCCATCTCAAGAAGAAAGTAGCCAAAACAGATCAAACAGAAAACACACAATCTTCATTGTCTTCCCCGAACCCGTCTTCCATAGAATCATTCGAACACATAGAAGCATCTTCAATGAACACCAACCCAGAATCTGGCCACAGCCACCTCCCGAAGCTCCTGTTTGCCGAGTGGTTCTCACTGGACCAATTCCTAGGCCAGGACACCAGGAATCGTGACTCTTCTGTTCCGGGTTTCGTTCCCTCTACCCAAACATTTCCTAAAGATCCTGAATTTCAAGATTCTTGTTTGGAAAGCTTGTTGAACGAGAGTTCTGTAAGCAACGGTTCTGTTTCTGATCACGAACTGTTTCACATTCCAGATTTGAAGACGGAAGACTGGTTTCAGGACCATGGGTTTGGGAATTTTGTGACTCAGGAAGATATGTATAGCCATTTCCATTTCAACAGTGATGCTATGTACATGTGA
Protein Sequence:
- >Achn358581|Actinidia_chinensis|MYB|Achn358581
MKEMGMMELINDDRGDSLIGDNTRDQHYDRMVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLNSKLGANSPTLQPDWQECKKLYVVHLSEREYFAVPKNLKLLAVPLFELYDNVQSSSSLTISCLSGKMRCNKPVEKPKHKHHKGLWSPDEDQRLRNYILRHGHGRWTSVPVNAGLQRNGKSCRLRWINYLRPGLKRGMFTSQEEETVLTLHVMLGNKWSQIAHHFPGRTDNEIKNYWHSHLKKKVAKTDQTENTQSSLSSPNPSSIESFEHIEASSMNTNPESGHSHLPKLLFAEWFSLDQFLGQDTRNRDSSVPGFVPSTQTFPKDPEFQDSCLESLLNESSVSNGSVSDHELFHIPDLKTEDWFQDHGFGNFVTQEDMYSHFHFNSDAMYM*