Information report for 885785
Gene Details
Functional Annotation
- Refseq: XP_002864431.1 — cytochrome c oxidase assembly protein COX15
- Swissprot: Q9FKT8 — COX15_ARATH; Cytochrome c oxidase assembly protein COX15
- TrEMBL: D7ML75 — D7ML75_ARALL; Predicted protein
- STRING: Al_scaffold_0008_2049 — (Arabidopsis lyrata)
- GO:0006784 — Biological Process — heme a biosynthetic process
- GO:0055114 — Biological Process — oxidation-reduction process
- GO:0016021 — Cellular Component — integral component of membrane
- GO:0003677 — Molecular Function — DNA binding
- GO:0016627 — Molecular Function — oxidoreductase activity, acting on the CH-CH group of donors
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT5G56110.1
- Brassica napus: GSBRNA2T00095504001, GSBRNA2T00043978001, GSBRNA2T00020961001
- Brassica oleracea: XP_013610460.1, XP_013621603.1, XP_013621602.1
- Brassica rapa: XP_009126966.1, XP_009120123.1
- Cajanus cajan: C.cajan_47208
- Populus trichocarpa: Potri.011G167600.1
- Raphanus raphanistrum: RrC921_p1
Sequences
CDS Sequence:
- >885785|Arabidopsis_lyrata|MYB|885785
ATGGGTCGGATTCCATGTTGTGAAAAGGAGAATGTGAAGAGAGGACAATGGACTCCTGAAGAAGACAACAAATTGGCTTCTTATATTGCTCAACATGGTACTCGTAATTGGCGTCTCATCCCTAAGAACGCTGGGTTGCAAAGATGCGGGAAGAGTTGTAGGCTGCGATGGACGAACTATTTGCGTCCGGATTTGAAACACGGCCAGTTCTCGGAGACTGAGGAACATATCATTGTCAAGTTTCACTCTGTTCTTGGTAACCGGTGGTCGTTGATTGCGGCGCAACTTCCTGGTCGAACGGACAACGATGTGAAAAACTATTGGAACACGAAGCTGAAGAAGAAGTTGTCGGGAATGGGAATAGATCCAGTGACCCACAAGCCTTCCTCGCATCGAATGTGGGGAAGAGGATTGGGAATCATGTTTGCTTTGCCGTTTTCTTATTTTCTGCGGAAAGGGTATATTACTCTACGTCTTGGAGTTCAGCTCTCTGGTTTATTTGCGCTTGGTGCTGGACAAGGTCTCATTGGTTGGTGGATGGTTAAAAGTGGTTTAGAGGAGCCGCCGTCTGAATATTCTCAACCGAGGGTAAGCCCATACCGTCTTGCAGCTCACCTGACCTCAGCTTTTGCCATTTATTGTGGACTTTTCTGGACCGCTCTCTCTGTTGTTATGCCTGAACCACCAGCTGAGTCACTGGCTTGGGTTCGGGGAGCAGCTAAAGTGAAGAAGCTTGCATTACCAGTAAGCTTGATTGTTGGTATCACTACGATTTCAGGAGCATTTGTTGCTGGAAATGATGCTGGTCGTGCATTCAACACATTCCCAAAAATGGGTGACACATGGATCCCAGATAATATATTTGAGATGAAACCACTTTTACGCAACTTTTTCGAGAACACAGCAACTGTTCAGCTTGATCATCGCCTTCTTGCAACCACAACGCTAATAGCAATTGGAACAATGTGGTGGTTCACAAGGAAGCTAGACATACATCCAGCCGTTAAAGCTTTGATCGGAAGTACTGTGGGAATGACTGCTGTTCAGGTGACATTAGGTGTATTAACGCTTCTGAGTTATGTTCCGGTCTCACTAGGAAGTGCACATCAAGCAGGAGCTTTAACACTTCTCACTTTGATGCTACTTCTCAATCACACTCTTCGGAGGCCATCGCCTTCTCTTCTCAAATCCCTTCCACAAGTTGCTAAATCAAATTTCAGCTAA
Protein Sequence:
- >885785|Arabidopsis_lyrata|MYB|885785
MGRIPCCEKENVKRGQWTPEEDNKLASYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSETEEHIIVKFHSVLGNRWSLIAAQLPGRTDNDVKNYWNTKLKKKLSGMGIDPVTHKPSSHRMWGRGLGIMFALPFSYFLRKGYITLRLGVQLSGLFALGAGQGLIGWWMVKSGLEEPPSEYSQPRVSPYRLAAHLTSAFAIYCGLFWTALSVVMPEPPAESLAWVRGAAKVKKLALPVSLIVGITTISGAFVAGNDAGRAFNTFPKMGDTWIPDNIFEMKPLLRNFFENTATVQLDHRLLATTTLIAIGTMWWFTRKLDIHPAVKALIGSTVGMTAVQVTLGVLTLLSYVPVSLGSAHQAGALTLLTLMLLLNHTLRRPSPSLLKSLPQVAKSNFS*