Information report for 471078
Gene Details
Functional Annotation
- Refseq: XP_020868167.1 — cell division cycle 5-like protein
- Swissprot: P92948 — CDC5L_ARATH; Cell division cycle 5-like protein
- TrEMBL: D7KJT9 — D7KJT9_ARALL; MYB transcription factor
- STRING: fgenesh2_kg.1__1032__AT1G09770.1 — (Arabidopsis lyrata)
- GO:0009870 — Biological Process — defense response signaling pathway, resistance gene-dependent
- GO:0010204 — Biological Process — defense response signaling pathway, resistance gene-independent
- GO:0042742 — Biological Process — defense response to bacterium
- GO:0050832 — Biological Process — defense response to fungus
- GO:0009507 — Cellular Component — chloroplast
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT1G09770.1
- Brassica napus: GSBRNA2T00047140001, GSBRNA2T00012860001, GSBRNA2T00156151001, GSBRNA2T00100435001
- Brassica oleracea: XP_013604207.1, XP_013585676.1
- Brassica rapa: XP_009110802.1, XP_009148277.1
- Manihot esculenta: Manes.09G148400.1.p
- Raphanus raphanistrum: RrC713_p4, RrC1789_p3
Sequences
CDS Sequence:
- >471078|Arabidopsis_lyrata|MYB|471078
ATGAGGATTATGATTAAGGGAGGTGTTTGGAAGAACACCGAAGATGAGATTCTCAAGGCCGCCGTGATGAAGTATGGTAAGAACCAATGGGCTCGGATCTCGTCTCTTCTCGTTCGTAAGTCGGCTAAACAGTGTAAAGCTCGATGGTACGAGTGGCTCGATCCTTCTATCAAAAAGACTGAATGGACCAGAGAAGAAGATGAGAAGCTTCTACATCTTGCTAAACTCCTGCCTACTCAGTGGAGAACTATTGCTCCTATTGTGGGCCGTACACCATCTCAATGCCTTGAGAGGTATGAGAAGCTCCTTGATGCAGCATGTACTAAGGACGAGAATTATGATGCAGCGGATGATCCGCGAAAATTACGACCTGGTGAGATTGATCCGAACCCAGAAGCAAAGCCTGCTCGTCCTGATCCGGTAGACATGGACGAAGACGAGAAAGAAATGCTTTCTGAAGCAAGAGCTAGATTGGCTAACACTAGGGGAAAGAAGGCTAAAAGAAAAGCTAGAGAAAAACAACTTGAGGAAGCTAGAAGGCTTGCTTCTCTGCAAAAAAGAAGAGAACTAAAAGCAGCTGGGATTGATGGAAGGCATAGGAAAAGAAAGAGAAAGGGAATCGACTATAATGCAGAAATTCCTTTTGAAAAGAGGGCACCTGCTGGATTTTATGATACTGCGGATGAAGATCGTCCTGCTGACCAAGTAAAATTTCCAACTACCATTGAAGAACTTGAAGGAAAAAGAAGAGCTGATGTAGAAGCACATTTACGCAAACAAGATGTTGCAAGGAATAAAATTGCTCAGAGACAGGATGCTCCAGCAGCTATATTGCAAGCAAACAAGCTGAATGATCCCGAAGCTGTTAGGAAGAGGTCAAAGCTGATGTTACCACCACCGCAGATTTCAGACCATGAGCTAGAAGAAATTGCTAAGATGGGCTACGCAAGTGACCTTCTTGCCGAGAATGAGGAGCTAACAGAAGGCAGTGCTGCTACTCGTGCACTTTTGGCAAATTACTCACAAACACCAAGGCAAGGAATGACACCCATGAGGACGCCTCAAAGAACTCCTGCTGGTAAAGGTGATGCTATTATGATGGAAGCAGAAAACCTGGCCAGATTAAGGGACTCCCAGACACCTTTGCTAGGAGGAGAAAATCCTGAGTTGCACCCTTCTGACTTCACTGGGGTCACTCCGAGAAAGAAGGAGATTCAAACGCCTAATCCAATGTTGACCCCTTCGATGACTCCTGGTGGTGCTGGTCTTACTCCAAGAATTGGCTTGACGCCATCAAGGGATGGGTCTTCTTTTTCTATGACACCCAAAGGGACTCCCTTCAGGGATGAACTTCACATTAATGAAGACATGGACATGCACGAAAGTGCAAAACTTGAGAGGCAGAGACGAGAGGAAGCTAGAAGGAGTTTACGCTCTGGTTTGACTGGGCTTCCTCAGCCAAAGAACGAGTACCAAATAGTTGCACAACCTCCTCCAGAGGACAATGAAGAGCCAGAAGAGAAAATTGAGGAAGACATGTCAGACAGGATAGCTAGGGAAAAGGCTGAGGAAGAAGCAAGACAACAGGCATTGCTTAAGAAGAGATCCAAGGTCTTGCAGAGAGATCTTCCTAGACCCCCAGCTGCTTCATTGGAAGTAATTAGGAACTCGTTGCTTTCAGCTGATGGAGACAAAAGTTCTGTTGTTCCTCCTACTCCGATTGAGGTTGCAGATAAAATGGTAAGAGAGGAGCTTCTACAGTTGCTGGAGCATGATAATGCAAAGTATCCGCTTGATGAGAAAGCTGAGAAGAAGAAAGGAGCCAAGAACCGTACCAACAGTTCTGCTTCTCAAGTTCTTGCAATTGACGATTTTGATGAAAATGAACTCCAAGAGGCTGACAAAATGATAAAGGAGGAGGGGAAGTTTCTTTGTGTGTCAATGGGACATGAGGACAAGTCACTTGATGATTTCGTAGAAGCTCACAACACATGCGTGAACGATCTCATGTACTTCCCCACTCGAAGTGCTTACGAGCTCTCAAGTGTTGCTGGGAACGCGGACAAAGTTGCAGCATTGCAGGTGGAGATGGAAAATACAAGAAAAAAGATGGAGGAGGATGAGAAGAAGGCAGAACACATGAAGGCCAAGTATAAAACTTATACAAAGGGTCATGAGAGGAGGGCAGAGACCGTGTGGACCCAAATAGAGGCGACTTTGAAGCAGATTGAGATTGGTGGAACAGAAGTAGAGTGTTTCAATGCATTGAAGAGGCAAGAAGAGATGGCTGCATCTTTCAGGAAAAGGAATTTGCAAGAGGAAGTGATAAAGCAAAAGGAAACAGAGAGTAAACTGCAAACGCGCTATGGGAATGTGTTGGCAATGGTTGAAAAAGCAGAGGAGATAATGGTCGGGTTCCGAGCACAGGCATTGAAGAAACAAGAGGATGTGGAAGATTCTCACAAACTGAAAGAAGCTAAGGTTGCCACTGGAGAGGAAGAGGACGTAGCCATAGTCATGGAAGCTTCTGCATAA
Protein Sequence:
- >471078|Arabidopsis_lyrata|MYB|471078
MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLLPTQWRTIAPIVGRTPSQCLERYEKLLDAACTKDENYDAADDPRKLRPGEIDPNPEAKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDGRHRKRKRKGIDYNAEIPFEKRAPAGFYDTADEDRPADQVKFPTTIEELEGKRRADVEAHLRKQDVARNKIAQRQDAPAAILQANKLNDPEAVRKRSKLMLPPPQISDHELEEIAKMGYASDLLAENEELTEGSAATRALLANYSQTPRQGMTPMRTPQRTPAGKGDAIMMEAENLARLRDSQTPLLGGENPELHPSDFTGVTPRKKEIQTPNPMLTPSMTPGGAGLTPRIGLTPSRDGSSFSMTPKGTPFRDELHINEDMDMHESAKLERQRREEARRSLRSGLTGLPQPKNEYQIVAQPPPEDNEEPEEKIEEDMSDRIAREKAEEEARQQALLKKRSKVLQRDLPRPPAASLEVIRNSLLSADGDKSSVVPPTPIEVADKMVREELLQLLEHDNAKYPLDEKAEKKKGAKNRTNSSASQVLAIDDFDENELQEADKMIKEEGKFLCVSMGHEDKSLDDFVEAHNTCVNDLMYFPTRSAYELSSVAGNADKVAALQVEMENTRKKMEEDEKKAEHMKAKYKTYTKGHERRAETVWTQIEATLKQIEIGGTEVECFNALKRQEEMAASFRKRNLQEEVIKQKETESKLQTRYGNVLAMVEKAEEIMVGFRAQALKKQEDVEDSHKLKEAKVATGEEEDVAIVMEASA*