Information report for PH01001726G0070
Gene Details
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Functional Annotation
- Refseq: NP_001338675.1 — uncharacterized protein LOC542536
- Refseq: XP_004961485.1 — homeobox protein HOX1A isoform X1
- Refseq: XP_022681087.1 — homeobox protein HOX1A isoform X2
- Swissprot: Q8H991 — HAZ1_ORYSJ; Homeobox protein HAZ1
- TrEMBL: A0A0E0A746 — A0A0E0A746_9ORYZ; Uncharacterized protein
- TrEMBL: A0A446K7A3 — A0A446K7A3_TRITD; Uncharacterized protein
- STRING: OGLUM06G08790.1 — (Oryza glumipatula)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- A homeobox (HB) encodes a protein domain, the homeodomain (HD), which is a conserved 60-amino acid motif present in transcription factors found in all the eukaryotic organisms. This 60-amino acid sequence folds into a characteristic three-helix structure that is able to interact specifically with DNA. Most HDs are able to bind DNA as monomers with high affinity, through interactions made by helix III (the so-called recognition helix) and a disordered N-terminal arm located beyond helix I. The high degree of conservation of this type of domain among diverse proteins from different kingdoms indicates that this structure is crucial to maintain the HD functionality and that the role played by this domain is vital.
Literature and News
Gene Resources
- SuperFamily: SSF46689
- SMART: SM00389
- Gene3D: G3DSA:1.10.10.60
- PROSITE profile: PS50071
- Pfam: PF00046
- PROSITE pattern: PS00027
- Gene3D: G3DSA:1.20.5.170
- InterPro: IPR009057 IPR001356 IPR017970
Sequences
CDS Sequence:
- >PH01001726G0070|Phyllostachys_heterocycla|HB-other|PH01001726G0070
ATGGACAAAACTACTACTTCTGGTCCTGTTGAGGGAAATGGTGAGATTGGGAATGATGCAAGCTCTAGTCAGAATCCTAAGACTTGTAGGCACCAAAGTTTGCCATCTACATCTCAAGCAACAGAAAAGACCATGTGCGCAAGGAAAAACTATAAAAAGGCAGCTAACAGGGGAAGGAAAGGCTCCCAAGTATTAGCTGGGAGAAAAAATTCTTTGAGATCATCTCATACAAATGTCAGGGTGCTTCATTTTATGTCAACTGCAAAGAATTCACCTAGTGAGTCTGTACACACTCTAGTACAACCGGCTGCTAAAAGAACAACAAGGGGCAAACCCGCTAAAAATCCGAAAAATGAGTTCTCAAAAATTCGTCAGCGAGTTAGATACATATTGAATCGGATGAACTATGAGCAAAGTCTGATTGAAGCTTATGCTAGTGAAGGCTGGAAAAGGCAAAGTTTGGAAAAGATAAGACCTGAGAAGGAGCTTGAACGAGCAAAGGCAGAAATCTTGCGGTGCAAGTTGAGAATACGAGAAGCCTTCCAGAATCTTGATTATCGCCTATCTGAGGGGAAGCTTGAGGAATCTTTGTTTGATTCTGAAGGAGAGATATCTAGCGAAGATAAAGTTTTTCCTGAGGCAGTTGCTTTCGCAAATGGTCCTAAGCAAAATGATGTATCGGATCTTCCATCAGACGGTTCAGAAGACAATGATTTCGACCCTAATTTGGCCGAAGAATGTGTGGCTAGTCAGGCAGAAGGATCTTCTGAAGAGGATGAGGACGAAGGTTCAGACTCTGATGACTCAAACTTTGTTACCTCTTCTGACAATTCAGAACCTTTGAAGGACAAAGAGAAAGTTGATTACCTTGGATTACCTTCTGAGGACTCGGAGGATGATGACTATGATCCAGCAGGTCCTGATTCTGATAAAGATACCCAAAAGAAGCAATCAAGTTCAGATGAGTCAGACTTCACATCTGACTCTGATGATTTATGTGCCGAGATTGCTAAGTCTTGTGGTCAGGATGAAGTTTCATCAGGTTCTAAGGCTGGCGACCCTACGAATGACTTGGAAGGAACCACTGTTCGGGCTAACACAGAAAATTCCAATATCACTTCTAAGGATATTGTAATGGACCAAGATGTGGTTTTACCTGTTTCGGGGAGACGGGAGGTTCAACGGTTGGACTACAAAAAACTGTATGATGAGGCTTATGGGGGAGCGTCATCTGATTCAAGTGATGGTGAAGAGTGGTCTGGGAAGAGCACACCCGAAAAAGATAATGAAGAACAAAGTGAAACGGATTCTTTTGCATGCAAAAGCTCCAGAAGAACAGGGGCTGTGCACCAGAGTAATGAACTCATTCCACAAAGTGCTAGACAAAGCTTGCACCCTGATGCTCTTCATGGTTCAAGGCTACGTGAACATTTCAAAATAGACCAATATCCTAGCCGTGCTGTTAAAGAAAGCCTGGCACAAGAACTAGGGCTGACATTCCATCAGGTTAGCACATGGTTTGCAAGTACGCGTCATTACACAAGAGTAGCTACCAAAAAAGGCACTCACCTAGAAAACCATAGCACCAAGAGAAATAGGAGCTCAGTGGTAGCTAGCGTGCAGGTTACAGACCCCAAGGAGACGATGATGGAAAAACGTAATGTCTGTAAAAATGATGTTAGGAACAAGGAGATGACATCCAGAAATCCGAATGAAGTTCTCAAAAAAGATAGTTCAGTGAAGCAAGACATCAATGGTGGACGGAGAATGCTTGTTACTCCTCAAGAAAGCAGCCAAAACTACACTACCACCTTGGGATTAGTAGGCTGTTCAAAAGGTGGGTCCAGAGATAACCATTGCGAGAATACCTCCTCAAGAGATGTTGGAAGGCCAAAAGATAACTCTGCAGAGGATCAGAATCTGGGGCTAGAACTAGACGAGGGAAGAAAAAAGGCAATACTGCGGGAGCTAAAGAGGAGAAAAATGGGCAGATGA
Protein Sequence:
- >PH01001726G0070|Phyllostachys_heterocycla|HB-other|PH01001726G0070
MDKTTTSGPVEGNGEIGNDASSSQNPKTCRHQSLPSTSQATEKTMCARKNYKKAANRGRKGSQVLAGRKNSLRSSHTNVRVLHFMSTAKNSPSESVHTLVQPAAKRTTRGKPAKNPKNEFSKIRQRVRYILNRMNYEQSLIEAYASEGWKRQSLEKIRPEKELERAKAEILRCKLRIREAFQNLDYRLSEGKLEESLFDSEGEISSEDKVFPEAVAFANGPKQNDVSDLPSDGSEDNDFDPNLAEECVASQAEGSSEEDEDEGSDSDDSNFVTSSDNSEPLKDKEKVDYLGLPSEDSEDDDYDPAGPDSDKDTQKKQSSSDESDFTSDSDDLCAEIAKSCGQDEVSSGSKAGDPTNDLEGTTVRANTENSNITSKDIVMDQDVVLPVSGRREVQRLDYKKLYDEAYGGASSDSSDGEEWSGKSTPEKDNEEQSETDSFACKSSRRTGAVHQSNELIPQSARQSLHPDALHGSRLREHFKIDQYPSRAVKESLAQELGLTFHQVSTWFASTRHYTRVATKKGTHLENHSTKRNRSSVVASVQVTDPKETMMEKRNVCKNDVRNKEMTSRNPNEVLKKDSSVKQDINGGRRMLVTPQESSQNYTTTLGLVGCSKGGSRDNHCENTSSRDVGRPKDNSAEDQNLGLELDEGRKKAILRELKRRKMGR*