Information report for Genemark1.2217_g
Gene Details
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Functional Annotation
- Refseq: XP_005649729.1 — hypothetical protein COCSUDRAFT_61427
- TrEMBL: I0Z3G6 — I0Z3G6_COCSC; Uncharacterized protein
- STRING: XP_005649729.1 — (Coccomyxa subellipsoidea)
- GO:0000724 — Biological Process — double-strand break repair via homologous recombination
- GO:0006334 — Biological Process — nucleosome assembly
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0008283 — Biological Process — cell proliferation
- GO:0009555 — Biological Process — pollen development
- GO:0009934 — Biological Process — regulation of meristem structural organization
- GO:0010026 — Biological Process — trichome differentiation
- GO:0031507 — Biological Process — heterochromatin assembly
- GO:0045787 — Biological Process — positive regulation of cell cycle
- GO:0048366 — Biological Process — leaf development
- GO:0005634 — Cellular Component — nucleus
- GO:0016021 — Cellular Component — integral component of membrane
- GO:0033186 — Cellular Component — CAF-1 complex
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- A homeobox (HB) encodes a protein domain, the homeodomain (HD), which is a conserved 60-amino acid motif present in transcription factors found in all the eukaryotic organisms. This 60-amino acid sequence folds into a characteristic three-helix structure that is able to interact specifically with DNA. Most HDs are able to bind DNA as monomers with high affinity, through interactions made by helix III (the so-called recognition helix) and a disordered N-terminal arm located beyond helix I. The high degree of conservation of this type of domain among diverse proteins from different kingdoms indicates that this structure is crucial to maintain the HD functionality and that the role played by this domain is vital.
Literature and News
Gene Resources
- SuperFamily: SSF46689
- SMART: SM00389
- Gene3D: G3DSA:1.10.10.60
- PROSITE profile: PS50071
- Pfam: PF00046
- PROSITE pattern: PS00027
- Gene3D: G3DSA:1.20.5.170
- InterPro: IPR009057 IPR001356 IPR017970
Homologs
- Oryza sativa: FSM;CAF-1
Sequences
CDS Sequence:
- >Genemark1.2217_g|Coccomyxa_subellipsoidea_C-169|HB-other|Genemark1.2217_g
ATGTCTGCTGCGCACAAGCCAGAAGAGCAGGAGGATCAGCGGAAGAGGAAGAGAGCACATGCAAGCAAGGAGCAGCTGGAGGAGTTTTTCGCTGGCAACGCAAATCCCAGCGCTGCCGAGAAGGCCAGCTTGGCAGAGCAGTCCGACCTGACCGTCCAGCAGGTGTCCACATGGTTTGGAAACAGGCGCAAGAAGGCTCGCTTGGCCCAAGCAGCGCAAGCGGACGGTGCCGCAGGGCCAGCTGCCGCTCAGGCGCCTGAGCCAATCATCATAGATGACGAGGACGCAGATATGGCCGCTGAGGATATGGTGGAGAGTTCAGAGCATGCTGCCAGGACCGCCGTGGCAGAGCCAGCTGCATGCATGCCAGAGCAGCAGGCAGGGCCGCCTGCAACTCCAGCAGCAGTGTGTAGCGTGCACAGAGAAGAGCAGATCAAGCAGCTGAAAGAGGAGATCGCAGAACTGGAGAGCTATGTCACCTCACGGCCCCATCCCATCGTCACCTTGGACTTTGCGAAATTTGAGTTTATCCTGCAGAAAAGCCAGGTGGGGATCTGGTTGGTGGGCTGCAGTCTGCCACTGTCAGAGGCCACCGAGAAGCTCTGGTACCACTGCAAAGGCGACTACAACCCCGGGTCACCCCTCACAAAGGCGGCCATCCGCAACATGATCATCGAGGTCGCCGCGCGAAAGAGCTATGCTGCCAAAGACGCTGGCAGTGACAAAGTGGATGCGCTGGAGGACACAACAGCCAGTTTCCTGTGGCAGTGGGAGGTGCGGGACCAGAAGTACCTGCCTGTGGCCCACCGCAATGAGGGCATCCAGCACAAGAAGCAGATGCGAAAGGTGGCGGCTCGCCTGACGGCGCTGGCCGCAGCGTGCAAAGCGCTGGAGGGCAAGGGCACAGACAAGCAGGTGGCGAAGGCGCTGGCTAAGCTCGACAAGCTTGAGAAGCCCCTGCTGAGCCCAGCTGCAGCCGCCGCAGACTCAGCTGCGGAGAACCCGAGCGCCTCGCAGCCGGCCCCCGCTGGTGGGGAAGGGACTCCCGGAGCGGATGCGAGCAGTGTGCCAGCGGCTGACAAGGAGGCGGACGAGGCAGAGAAGGCCAAGCCTGCCCAGGAGAAGCAGGAGGCGGATGCCCAGAAGGAGCTTGCTCGGCTAGAGAAGCAGAAGGCTGCTGAGGAGAAGGAGAGGGCGCGCATTGAGGCAGCCAGGGAGAAGGAGCGCCAGCGCCTGGAGAAAGAGGCGCAGAAAAAGGAGAAGGAGGCCGAGAAGGAGAGGCAGAGAGCTGCAAAGGAGGCGGAAAAAGAGCGGCAACGGGCTGAGAAGGAGGCTGCAAAGACAGGATTCGAGTCGCGTGACGCCCTGTGCAAATCCCGCAATCTCATGAACAGGTTCTTCAAGACGCCAGCGAAGACTGGCGGTGAAGCCGAGGGCGGCAGCAGCCAGCCGCTCAAGACTCCCATGTCCGCGCTGCCGCTGCGACACCCCTTCCATGAAATCTTTACCCCCGCCCCCGAAAGCGCACGGCTGCCCGTGCCCGAGGACATAAGCGCAGCATTTGATGAGGCAATTGCGGCGGCCAAGCAGCGTGGTGTGTCTGAGCTGGAGGAGGGCATGCAGCACATCAGGCAATCTTGGAAGTCCCGGCCGCGGCATAAGCGCATCCGAGGTCCGCCCTCTGAAAAGCGTGAAATAATAATAATAATAATAATAATAACAACAACAACAATAATAATAATAATAATAATAGTAATAATAATAATAATGACAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGTACTAATGAAAATAATAATAATAGTAATAATAATAATGATTGAAGAGTTTGGGCGGCTGGAGAAGGCGCGGCTGTGGCGCCGCAAATTTCTGTGGTTCGCCGCCTCCAAGCGCCCGGCCTACTACGGGTCGTGGTCCGCCGCCAGCCCAACAGTGACGGGGCGGCGCCCGTTGGCGAGGGACGATGCGCTGGACTATGAGGTCATGAGCGACGAGGAGTGGGAGGAGGAGCCCGAGGGAGAGAACCTGTCGGACGATGACATGGAGGAGGAAGAAGACGAGGCGGAGGATTCGTGCGGGGACGGATTTGTGGTGCCCAACGGCTACATCTCGGACGACGAGGGCGTCGCATCCGTGCAGCAGGACCTCGACGATCTCGCCGCCGAGCTCGACGACGAGGCGACGGGTGCGGAGGTGGCGGCCGGCGGCGACGCAGTGCAGCGCGACCGGCTGCGGCTGCTGAATGCGGCGCTGGACCGGGCGACGCGCGCGAATCGGCCCATCATCATCACGCGCCTGCCGATGCCGCCCGCGCCGTCCCAGGACTCCGCGCGGCCCGCCCACCTCACCGGCGACCCCGCCCTCCTCTCCGCCCTCCAGCCTCTGGTCCTGACGACCAAGGTCAAGATCCGGATGCTGCCGCCACCAGAGACCGAGGACGCTCCCGGGGATGTCGCCGCGGACGGCGCCGCGGGGCCGGCAACAGCGCGCGGCCGCGGCCGGGCGGCCGCGCAGGAACAGGAGGAGCTGACGCCAGACTTGGTGCAGTTCCTGCTCTCGCACCCCGAGCTCAAGGCGGTGGCCAAGGTCGCAAAGGCGTTCACTGAGGCGCACCCGGATCGCAAGGTGGTGAAGAAGTGGGTACACAACAAGGTGAAGGACATCGCGGAGCACTCCGGAGGCGCCTGGGTCATCAAACAGAGCTCTGCCAGTGCCCAGCAGCCAGCCGATGCCGAACAGTCTCCAGCATCCACACCATTGCAGCCGCGCCCATCCTCTGCAGACCAGCCGCCGCTCGCATCACACCCGGCTGGCGAAGCTGCGACTTCAGCGGCGGTGACCCCCGCCACTGCCGGCCCTCTGGACCGTTTCCTGCGCGCCGGGTCACAGCCGCAGGCCACGCCGCAGCCGCAGCGCGCGGCTGCTGCCGCCGCTGTGCAGGGACTCGGGGAAGTGGTAATTTTGGATGAGGACGAAGGCGCTCCTGCCCCTATGGACGTGGACGCACCACCAGCTGCCGCCGCTGCGCAGACGCCCAGCACCAAAGACGAGATACGGGGGACGGCGGATCCGTTCTGGAGGGGGCTGGCGGAGAGCATCGCGGCAAACAGCCTGCAGGTGGCGGAGCAGCTGCAAAGGGGGTTTAAGGCGAGCGCGGCAGGGGAGTTGGTGCGCGCGGTGCCGAGCTTTGTGCTCACGGCGATGGTGAAGGGCTTGGCGAGCGGGCAGTGCTCGCGGCTGCTGCAGTCCTGCCTGCTCAAGGCGCTGGCGCAGCTGCTGCGCCTGCTTGTGGCGGCCGGGGACACTTCCAACCGCGTCCCCACCCCTACCAAGGTGTTTAGGGACGAGCGGTCTGCCCCGGTGGCGGTGTCTCTGGATGAGATGCTGGCCTGCCGCAGCCTGCTGGGCGCGCTGCAGGCATGCATGCGCGCCAAACAGAACCGCATGCCGCAAGTCGCGCAGCCCGCCGCCCAGCTGCTCGCGGCGATGCTAGCGGTGGGTGCTGCTGAGCTGGGCACCCCGGCGGCCGGGTCACAGGAATCCCAGCAGCCATCTCTGGCAGCAGCGGCGATCAAAGAAGCCGCAGAGCTGCGCTTGCATGTGGCCCGGGACGACGCCTGGCATGTCCTCTTCACAGAACTGCTGGGGCCCACAAGCGATGCCTCTGTGGTGGAATGCGTCGCGAAGACTCTCGGCACGATCGGCCGTGATGCAGCAGCTGCACGCACACTGCTGCAGCGGTACTCGGACATCTTCAGCGACAAGGAATTGCATGGGAAGCTGCAGAAGCTGCTGCTCGCCGCCTCCGCGGTCGCCACCAAGCATCGGCAGAAGCGGGCCATGGAGGACTGCCTGAGCTTCCTGGGTGACCTGCTGTCACTCCAAGAGGCAGACGGGCCGGTGAGAAATGCGACAGCCGTCACGAGCTTTGGCGCCCTGCTACGATCGCTGGAAGAGACTGTCAGCGCCCACATTCCAAGCGAGCCGGCTGACCCTCCAGCTGGGAACACCCGATGCCTCCTTGCCGCCCTGAAGGTGGGGGCATTTGCAGCGAGGTTCGCAACAACCCACAAGCAATGCCTGAGCGCCATGCAAAGGTCGCTGCCCGGACCAATTGCAGCGCATGAGAGTGTATGGGAGAAGCTCCAGGTGGCAGACATAGCGCAGGCACTGCTGGCACAGCTCAGCACTGCCCCGCCACAATAG
Protein Sequence:
- >Genemark1.2217_g|Coccomyxa_subellipsoidea_C-169|HB-other|Genemark1.2217_g
MSAAHKPEEQEDQRKRKRAHASKEQLEEFFAGNANPSAAEKASLAEQSDLTVQQVSTWFGNRRKKARLAQAAQADGAAGPAAAQAPEPIIIDDEDADMAAEDMVESSEHAARTAVAEPAACMPEQQAGPPATPAAVCSVHREEQIKQLKEEIAELESYVTSRPHPIVTLDFAKFEFILQKSQVGIWLVGCSLPLSEATEKLWYHCKGDYNPGSPLTKAAIRNMIIEVAARKSYAAKDAGSDKVDALEDTTASFLWQWEVRDQKYLPVAHRNEGIQHKKQMRKVAARLTALAAACKALEGKGTDKQVAKALAKLDKLEKPLLSPAAAAADSAAENPSASQPAPAGGEGTPGADASSVPAADKEADEAEKAKPAQEKQEADAQKELARLEKQKAAEEKERARIEAAREKERQRLEKEAQKKEKEAEKERQRAAKEAEKERQRAEKEAAKTGFESRDALCKSRNLMNRFFKTPAKTGGEAEGGSSQPLKTPMSALPLRHPFHEIFTPAPESARLPVPEDISAAFDEAIAAAKQRGVSELEEGMQHIRQSWKSRPRHKRIRGPPSEKREIIIIIIIITTTTIIIIIIIVIIIIMTIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIVLMKIIIIVIIIMIEEFGRLEKARLWRRKFLWFAASKRPAYYGSWSAASPTVTGRRPLARDDALDYEVMSDEEWEEEPEGENLSDDDMEEEEDEAEDSCGDGFVVPNGYISDDEGVASVQQDLDDLAAELDDEATGAEVAAGGDAVQRDRLRLLNAALDRATRANRPIIITRLPMPPAPSQDSARPAHLTGDPALLSALQPLVLTTKVKIRMLPPPETEDAPGDVAADGAAGPATARGRGRAAAQEQEELTPDLVQFLLSHPELKAVAKVAKAFTEAHPDRKVVKKWVHNKVKDIAEHSGGAWVIKQSSASAQQPADAEQSPASTPLQPRPSSADQPPLASHPAGEAATSAAVTPATAGPLDRFLRAGSQPQATPQPQRAAAAAAVQGLGEVVILDEDEGAPAPMDVDAPPAAAAAQTPSTKDEIRGTADPFWRGLAESIAANSLQVAEQLQRGFKASAAGELVRAVPSFVLTAMVKGLASGQCSRLLQSCLLKALAQLLRLLVAAGDTSNRVPTPTKVFRDERSAPVAVSLDEMLACRSLLGALQACMRAKQNRMPQVAQPAAQLLAAMLAVGAAELGTPAAGSQESQQPSLAAAAIKEAAELRLHVARDDAWHVLFTELLGPTSDASVVECVAKTLGTIGRDAAAARTLLQRYSDIFSDKELHGKLQKLLLAASAVATKHRQKRAMEDCLSFLGDLLSLQEADGPVRNATAVTSFGALLRSLEETVSAHIPSEPADPPAGNTRCLLAALKVGAFAARFATTHKQCLSAMQRSLPGPIAAHESVWEKLQVADIAQALLAQLSTAPPQ*