Gene Details:

  • Gene ID: Genemark1.2217_g
  • Gene Name: COCSUDRAFT_61427
  • Gene Family: HB-other Family
  • Description: HB-other Family protein
  • Species: Coccomyxa subellipsoidea C-169
  • Source: HB-other family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_005649729.1  — hypothetical protein COCSUDRAFT_61427
  • TrEMBL:  I0Z3G6  — I0Z3G6_COCSC; Uncharacterized protein
  • STRING:  XP_005649729.1  — (Coccomyxa subellipsoidea)

Gene Ontology:

  • GO:0000724  — Biological Process — double-strand break repair via homologous recombination
  • GO:0006334  — Biological Process — nucleosome assembly
  • GO:0006355  — Biological Process — regulation of transcription, DNA-templated
  • GO:0008283  — Biological Process — cell proliferation
  • GO:0009555  — Biological Process — pollen development
  • GO:0009934  — Biological Process — regulation of meristem structural organization
  • GO:0010026  — Biological Process — trichome differentiation
  • GO:0031507  — Biological Process — heterochromatin assembly
  • GO:0045787  — Biological Process — positive regulation of cell cycle
  • GO:0048366  — Biological Process — leaf development
  • GO:0005634  — Cellular Component — nucleus
  • GO:0016021  — Cellular Component — integral component of membrane
  • GO:0033186  — Cellular Component — CAF-1 complex
  • GO:0043565  — Molecular Function — sequence-specific DNA binding

Family Introduction:

  • A homeobox (HB) encodes a protein domain, the homeodomain (HD), which is a conserved 60-amino acid motif present in transcription factors found in all the eukaryotic organisms. This 60-amino acid sequence folds into a characteristic three-helix structure that is able to interact specifically with DNA. Most HDs are able to bind DNA as monomers with high affinity, through interactions made by helix III (the so-called recognition helix) and a disordered N-terminal arm located beyond helix I. The high degree of conservation of this type of domain among diverse proteins from different kingdoms indicates that this structure is crucial to maintain the HD functionality and that the role played by this domain is vital.

Literature:

Sequences:

CDS Sequence:
  • >Genemark1.2217_g|Coccomyxa_subellipsoidea_C-169|HB-other|Genemark1.2217_g
    ATGTCTGCTGCGCACAAGCCAGAAGAGCAGGAGGATCAGCGGAAGAGGAAGAGAGCACATGCAAGCAAGGAGCAGCTGGAGGAGTTTTTCGCTGGCAACGCAAATCCCAGCGCTGCCGAGAAGGCCAGCTTGGCAGAGCAGTCCGACCTGACCGTCCAGCAGGTGTCCACATGGTTTGGAAACAGGCGCAAGAAGGCTCGCTTGGCCCAAGCAGCGCAAGCGGACGGTGCCGCAGGGCCAGCTGCCGCTCAGGCGCCTGAGCCAATCATCATAGATGACGAGGACGCAGATATGGCCGCTGAGGATATGGTGGAGAGTTCAGAGCATGCTGCCAGGACCGCCGTGGCAGAGCCAGCTGCATGCATGCCAGAGCAGCAGGCAGGGCCGCCTGCAACTCCAGCAGCAGTGTGTAGCGTGCACAGAGAAGAGCAGATCAAGCAGCTGAAAGAGGAGATCGCAGAACTGGAGAGCTATGTCACCTCACGGCCCCATCCCATCGTCACCTTGGACTTTGCGAAATTTGAGTTTATCCTGCAGAAAAGCCAGGTGGGGATCTGGTTGGTGGGCTGCAGTCTGCCACTGTCAGAGGCCACCGAGAAGCTCTGGTACCACTGCAAAGGCGACTACAACCCCGGGTCACCCCTCACAAAGGCGGCCATCCGCAACATGATCATCGAGGTCGCCGCGCGAAAGAGCTATGCTGCCAAAGACGCTGGCAGTGACAAAGTGGATGCGCTGGAGGACACAACAGCCAGTTTCCTGTGGCAGTGGGAGGTGCGGGACCAGAAGTACCTGCCTGTGGCCCACCGCAATGAGGGCATCCAGCACAAGAAGCAGATGCGAAAGGTGGCGGCTCGCCTGACGGCGCTGGCCGCAGCGTGCAAAGCGCTGGAGGGCAAGGGCACAGACAAGCAGGTGGCGAAGGCGCTGGCTAAGCTCGACAAGCTTGAGAAGCCCCTGCTGAGCCCAGCTGCAGCCGCCGCAGACTCAGCTGCGGAGAACCCGAGCGCCTCGCAGCCGGCCCCCGCTGGTGGGGAAGGGACTCCCGGAGCGGATGCGAGCAGTGTGCCAGCGGCTGACAAGGAGGCGGACGAGGCAGAGAAGGCCAAGCCTGCCCAGGAGAAGCAGGAGGCGGATGCCCAGAAGGAGCTTGCTCGGCTAGAGAAGCAGAAGGCTGCTGAGGAGAAGGAGAGGGCGCGCATTGAGGCAGCCAGGGAGAAGGAGCGCCAGCGCCTGGAGAAAGAGGCGCAGAAAAAGGAGAAGGAGGCCGAGAAGGAGAGGCAGAGAGCTGCAAAGGAGGCGGAAAAAGAGCGGCAACGGGCTGAGAAGGAGGCTGCAAAGACAGGATTCGAGTCGCGTGACGCCCTGTGCAAATCCCGCAATCTCATGAACAGGTTCTTCAAGACGCCAGCGAAGACTGGCGGTGAAGCCGAGGGCGGCAGCAGCCAGCCGCTCAAGACTCCCATGTCCGCGCTGCCGCTGCGACACCCCTTCCATGAAATCTTTACCCCCGCCCCCGAAAGCGCACGGCTGCCCGTGCCCGAGGACATAAGCGCAGCATTTGATGAGGCAATTGCGGCGGCCAAGCAGCGTGGTGTGTCTGAGCTGGAGGAGGGCATGCAGCACATCAGGCAATCTTGGAAGTCCCGGCCGCGGCATAAGCGCATCCGAGGTCCGCCCTCTGAAAAGCGTGAAATAATAATAATAATAATAATAATAACAACAACAACAATAATAATAATAATAATAATAGTAATAATAATAATAATGACAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGTACTAATGAAAATAATAATAATAGTAATAATAATAATGATTGAAGAGTTTGGGCGGCTGGAGAAGGCGCGGCTGTGGCGCCGCAAATTTCTGTGGTTCGCCGCCTCCAAGCGCCCGGCCTACTACGGGTCGTGGTCCGCCGCCAGCCCAACAGTGACGGGGCGGCGCCCGTTGGCGAGGGACGATGCGCTGGACTATGAGGTCATGAGCGACGAGGAGTGGGAGGAGGAGCCCGAGGGAGAGAACCTGTCGGACGATGACATGGAGGAGGAAGAAGACGAGGCGGAGGATTCGTGCGGGGACGGATTTGTGGTGCCCAACGGCTACATCTCGGACGACGAGGGCGTCGCATCCGTGCAGCAGGACCTCGACGATCTCGCCGCCGAGCTCGACGACGAGGCGACGGGTGCGGAGGTGGCGGCCGGCGGCGACGCAGTGCAGCGCGACCGGCTGCGGCTGCTGAATGCGGCGCTGGACCGGGCGACGCGCGCGAATCGGCCCATCATCATCACGCGCCTGCCGATGCCGCCCGCGCCGTCCCAGGACTCCGCGCGGCCCGCCCACCTCACCGGCGACCCCGCCCTCCTCTCCGCCCTCCAGCCTCTGGTCCTGACGACCAAGGTCAAGATCCGGATGCTGCCGCCACCAGAGACCGAGGACGCTCCCGGGGATGTCGCCGCGGACGGCGCCGCGGGGCCGGCAACAGCGCGCGGCCGCGGCCGGGCGGCCGCGCAGGAACAGGAGGAGCTGACGCCAGACTTGGTGCAGTTCCTGCTCTCGCACCCCGAGCTCAAGGCGGTGGCCAAGGTCGCAAAGGCGTTCACTGAGGCGCACCCGGATCGCAAGGTGGTGAAGAAGTGGGTACACAACAAGGTGAAGGACATCGCGGAGCACTCCGGAGGCGCCTGGGTCATCAAACAGAGCTCTGCCAGTGCCCAGCAGCCAGCCGATGCCGAACAGTCTCCAGCATCCACACCATTGCAGCCGCGCCCATCCTCTGCAGACCAGCCGCCGCTCGCATCACACCCGGCTGGCGAAGCTGCGACTTCAGCGGCGGTGACCCCCGCCACTGCCGGCCCTCTGGACCGTTTCCTGCGCGCCGGGTCACAGCCGCAGGCCACGCCGCAGCCGCAGCGCGCGGCTGCTGCCGCCGCTGTGCAGGGACTCGGGGAAGTGGTAATTTTGGATGAGGACGAAGGCGCTCCTGCCCCTATGGACGTGGACGCACCACCAGCTGCCGCCGCTGCGCAGACGCCCAGCACCAAAGACGAGATACGGGGGACGGCGGATCCGTTCTGGAGGGGGCTGGCGGAGAGCATCGCGGCAAACAGCCTGCAGGTGGCGGAGCAGCTGCAAAGGGGGTTTAAGGCGAGCGCGGCAGGGGAGTTGGTGCGCGCGGTGCCGAGCTTTGTGCTCACGGCGATGGTGAAGGGCTTGGCGAGCGGGCAGTGCTCGCGGCTGCTGCAGTCCTGCCTGCTCAAGGCGCTGGCGCAGCTGCTGCGCCTGCTTGTGGCGGCCGGGGACACTTCCAACCGCGTCCCCACCCCTACCAAGGTGTTTAGGGACGAGCGGTCTGCCCCGGTGGCGGTGTCTCTGGATGAGATGCTGGCCTGCCGCAGCCTGCTGGGCGCGCTGCAGGCATGCATGCGCGCCAAACAGAACCGCATGCCGCAAGTCGCGCAGCCCGCCGCCCAGCTGCTCGCGGCGATGCTAGCGGTGGGTGCTGCTGAGCTGGGCACCCCGGCGGCCGGGTCACAGGAATCCCAGCAGCCATCTCTGGCAGCAGCGGCGATCAAAGAAGCCGCAGAGCTGCGCTTGCATGTGGCCCGGGACGACGCCTGGCATGTCCTCTTCACAGAACTGCTGGGGCCCACAAGCGATGCCTCTGTGGTGGAATGCGTCGCGAAGACTCTCGGCACGATCGGCCGTGATGCAGCAGCTGCACGCACACTGCTGCAGCGGTACTCGGACATCTTCAGCGACAAGGAATTGCATGGGAAGCTGCAGAAGCTGCTGCTCGCCGCCTCCGCGGTCGCCACCAAGCATCGGCAGAAGCGGGCCATGGAGGACTGCCTGAGCTTCCTGGGTGACCTGCTGTCACTCCAAGAGGCAGACGGGCCGGTGAGAAATGCGACAGCCGTCACGAGCTTTGGCGCCCTGCTACGATCGCTGGAAGAGACTGTCAGCGCCCACATTCCAAGCGAGCCGGCTGACCCTCCAGCTGGGAACACCCGATGCCTCCTTGCCGCCCTGAAGGTGGGGGCATTTGCAGCGAGGTTCGCAACAACCCACAAGCAATGCCTGAGCGCCATGCAAAGGTCGCTGCCCGGACCAATTGCAGCGCATGAGAGTGTATGGGAGAAGCTCCAGGTGGCAGACATAGCGCAGGCACTGCTGGCACAGCTCAGCACTGCCCCGCCACAATAG
Protein Sequence:
  • >Genemark1.2217_g|Coccomyxa_subellipsoidea_C-169|HB-other|Genemark1.2217_g
    MSAAHKPEEQEDQRKRKRAHASKEQLEEFFAGNANPSAAEKASLAEQSDLTVQQVSTWFGNRRKKARLAQAAQADGAAGPAAAQAPEPIIIDDEDADMAAEDMVESSEHAARTAVAEPAACMPEQQAGPPATPAAVCSVHREEQIKQLKEEIAELESYVTSRPHPIVTLDFAKFEFILQKSQVGIWLVGCSLPLSEATEKLWYHCKGDYNPGSPLTKAAIRNMIIEVAARKSYAAKDAGSDKVDALEDTTASFLWQWEVRDQKYLPVAHRNEGIQHKKQMRKVAARLTALAAACKALEGKGTDKQVAKALAKLDKLEKPLLSPAAAAADSAAENPSASQPAPAGGEGTPGADASSVPAADKEADEAEKAKPAQEKQEADAQKELARLEKQKAAEEKERARIEAAREKERQRLEKEAQKKEKEAEKERQRAAKEAEKERQRAEKEAAKTGFESRDALCKSRNLMNRFFKTPAKTGGEAEGGSSQPLKTPMSALPLRHPFHEIFTPAPESARLPVPEDISAAFDEAIAAAKQRGVSELEEGMQHIRQSWKSRPRHKRIRGPPSEKREIIIIIIIITTTTIIIIIIIVIIIIMTIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIVLMKIIIIVIIIMIEEFGRLEKARLWRRKFLWFAASKRPAYYGSWSAASPTVTGRRPLARDDALDYEVMSDEEWEEEPEGENLSDDDMEEEEDEAEDSCGDGFVVPNGYISDDEGVASVQQDLDDLAAELDDEATGAEVAAGGDAVQRDRLRLLNAALDRATRANRPIIITRLPMPPAPSQDSARPAHLTGDPALLSALQPLVLTTKVKIRMLPPPETEDAPGDVAADGAAGPATARGRGRAAAQEQEELTPDLVQFLLSHPELKAVAKVAKAFTEAHPDRKVVKKWVHNKVKDIAEHSGGAWVIKQSSASAQQPADAEQSPASTPLQPRPSSADQPPLASHPAGEAATSAAVTPATAGPLDRFLRAGSQPQATPQPQRAAAAAAVQGLGEVVILDEDEGAPAPMDVDAPPAAAAAQTPSTKDEIRGTADPFWRGLAESIAANSLQVAEQLQRGFKASAAGELVRAVPSFVLTAMVKGLASGQCSRLLQSCLLKALAQLLRLLVAAGDTSNRVPTPTKVFRDERSAPVAVSLDEMLACRSLLGALQACMRAKQNRMPQVAQPAAQLLAAMLAVGAAELGTPAAGSQESQQPSLAAAAIKEAAELRLHVARDDAWHVLFTELLGPTSDASVVECVAKTLGTIGRDAAAARTLLQRYSDIFSDKELHGKLQKLLLAASAVATKHRQKRAMEDCLSFLGDLLSLQEADGPVRNATAVTSFGALLRSLEETVSAHIPSEPADPPAGNTRCLLAALKVGAFAARFATTHKQCLSAMQRSLPGPIAAHESVWEKLQVADIAQALLAQLSTAPPQ*