Information report for Tp57577_TGAC_v2_mRNA1962
Gene Details
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Functional Annotation
- Refseq: XP_004506678.1 — scarecrow-like protein 21
- Refseq: XP_004506679.1 — scarecrow-like protein 21
- Swissprot: Q8H125 — SCL5_ARATH; Scarecrow-like protein 5
- TrEMBL: A0A2K3P6Q8 — A0A2K3P6Q8_TRIPR; SCARECROW-like protein transcription factor PAT1-like protein
- STRING: XP_004506678.1 — (Cicer arietinum)
Family Introduction
- The GRAS family of putative transcriptional regulators is found throughout the plant kingdom, and these proteins have diverse roles in plant development, including root development, axillary shoot development, and maintenance of the shoot apical meristem (Bolle, 2004). GRAS proteins show conserved residues in the C terminus but contain a variable N terminus with homopolymeric stretches of certain amino acids. It has recently been shown that two GRAS proteins that regulate root growth, SCARECROW (SCR) and SHORTROOT (SHR), interact with each other (Cui et al., 2007), while a class of GRAS proteins involved in regulating plant growth, the DELLA proteins, interact with a transcription factor involved in phytochrome signaling (de Lucas et al., 2008; Feng et al., 2008).
Literature and News
Homologs
- Cajanus cajan: C.cajan_26984, C.cajan_39555
- Cicer arietinum: XP_004506679.1, XP_004506678.1, XP_012568732.1, XP_004491478.1
- Glycine max: Glyma.18G081100.1.p, Glyma.08G325900.1.p, Glyma.14G016000.1.p, Glyma.02G297700.1.p
- Juglans regia: WALNUT_00002967-RA
- Lotus japonicus: Lj6g3v0802140.1
- Medicago truncatula: Medtr3g056110.2, Medtr3g056110.1, Medtr5g094450.2, Medtr5g094450.1
- Ricinus communis: 27613.m000642
Sequences
CDS Sequence:
- >Tp57577_TGAC_v2_mRNA1962|Trifolium_pratense|GRAS|Tp57577_TGAC_v2_mRNA1962
AGTAACCCCTTAACTCTTGGTTTTACAGGAAAATCATTATTACCGGGAAATGATATGGAGTGGTATTTCTTTAGCCCTCGTGATAGAAAGTACCCAAATGGATCAAGAACGAACCGTGCAACCAAATCTGGATATTGGAAAGCAACGGGGAAGGATCGAAAAGTGAATTCTCAAGCTCGAGCAGTGGGGATGAAGAAAACCCTAGTTTACTATCGAGGAAGAGCACCCCATGGATCTCGTACAAATTGGGTTATGCACGAATATCGCCTAGATGAGAGGGAATGTGAAACCACTCCAAGCTTACAGGATGCGTATGCTCTTTGTCGTGTGATCAAGAAGAATACAGTGATTGTGCCAAAACTTGGAGGTCAATATAGTAATCTTACAAGCCATGCCAAA ATGCAAACATCACAGAAACATGAAATTTCTTATGGTTCTGGCAGGTTCTACGTTGAACCTGTGCAGAATCTGGACTCATATGGCTTACCTTCGAGTGAGAATTTAGAAAATTATTCTTCCTCTGATAACAGCAGCCAAACATTCTATCCTTCTCATCAAATTCTAGAACCATATGGCACCTTTGAATCTGCTTCAACAAGCAACAACAGTTTCCCTTACCAAAATTCTCCGTCTACTCTCAGCTTCTCACCTAACAATAGTCCGGTGTCACAGCTAGAGTCAAATTCATACGTGTTGAGACCACAACATTCTCTTGAATTTGTTAATGGTCCTCCTGAGGATGATGACTCTTACTTGAGACACGACCTTGATGACTTGAGGCATAAGATGCTAGAGCTGGAATCTGTTATGCTCGGACCTAACGCAGACATGCTAGATACATACGATGCTGAAGTTAAACAAGAATCTGCTTCGTTCTTATTAGAGTCAGAGAAGTGGAAGAAAAACATGGAGATGGTATCTAAAGGAGATCTGAAAGAGATGCTTTATACTTGTGCAAAAGCCGTAGATGAGAATGATATTGAGACAATTGAATGGATGGTTACCGAGTTACGCAAAATAGTATCGATTATGGGCAATCCGGTTGAACGATTGGGAGCATACATGTTGGAGGCTCTTGTTTCAAAGATGGCTTCTTCAGGAAGCACAATCTACAAATCGTTAAAATGTAGTGAACCTACTGGTAATGAACTACTCTCTTACATGCATGTACTTTATGAAATATGTCCATACTTTAAGTTCGGGTATATGTCGGCAAATGGAGCAATTGCTGAAGCTATGAAGGAGGAACGTGAAGTACACATAATTGATTTTCAAATTACTCAAGGAACTCAGTGGGTGAGTCTGATCCAGGCTCTTGCTCGCAGGCCTGGAGGACCCCCAAAGATCAGAATAACAGGCGTTGACGACTCGTATTCAGCTTATGCGCGCGGAGGAGGGGTTGATATAGTGGGGGGAAGGTTATCAACGCTTGCACAGTCATGTCATGTACCCTTTGAGTTCAATGCTGTTAGAGTTCCTGCTTCTGAGGTGCAACTCGAAGACTTTGAACTTCGACATGGTGAAGCTGTGGCGGTGAATTTTGCGCTTATGCTACACCATGTGCCGGATGAAAGTGTCAACATTCATAATCATCGTGACCGGTTGTTGCGATTGGCTAAGCACATATCTCCCAAGGTGGTGACTCTAGTTGAGCAAGAATTCAATACCAATAACGCTCCATTCTTGGAGCGTTTTGTCGAGACAATGAACTACAACTCGGCTGTTTATGAATCGATTGATCTTGTTCTTCCAAGGGATCACAAAGAGAGGATTAATGTCGAACAGCACTGTTTGGCTCGAGAAGTCGTCAACTTGGTAGCCTGTGAAGGGGAAGAAAGAGTGGAACGTCACGAGCCTATGAGTAAGTGGAGAATGCGTTTCGCAAAGGCTGGATTTACGCCTTATCCATTGAGCTCCTTCATCAATTCTTCAATCAAGGATCTTCTGGATAGCTACCGTGGACATTACACTCTAGAAGAGAGAGATGGTGCACTATATCTTGGTTGGAAGAATCAAGTTCTTGTTGCTTCTTGTGCTTGGAGATGA
Protein Sequence:
- >Tp57577_TGAC_v2_mRNA1962|Trifolium_pratense|GRAS|Tp57577_TGAC_v2_mRNA1962
MQTSQKHEISYGSGRFYVEPVQNLDSYGLPSSENLENYSSSDNSSQTFYPSHQILEPYGTFESASTSNNSFPYQNSPSTLSFSPNNSPVSQLESNSYVLRPQHSLEFVNGPPEDDDSYLRHDLDDLRHKMLELESVMLGPNADMLDTYDAEVKQESASFLLESEKWKKNMEMVSKGDLKEMLYTCAKAVDENDIETIEWMVTELRKIVSIMGNPVERLGAYMLEALVSKMASSGSTIYKSLKCSEPTGNELLSYMHVLYEICPYFKFGYMSANGAIAEAMKEEREVHIIDFQITQGTQWVSLIQALARRPGGPPKIRITGVDDSYSAYARGGGVDIVGGRLSTLAQSCHVPFEFNAVRVPASEVQLEDFELRHGEAVAVNFALMLHHVPDESVNIHNHRDRLLRLAKHISPKVVTLVEQEFNTNNAPFLERFVETMNYNSAVYESIDLVLPRDHKERINVEQHCLAREVVNLVACEGEERVERHEPMSKWRMRFAKAGFTPYPLSSFINSSIKDLLDSYRGHYTLEERDGALYLGWKNQVLVASCAWR*