Information report for NNU_018448-RA
Gene Details
|
|
Functional Annotation
- Refseq: XP_010274383.1 — PREDICTED: protein SHORT-ROOT-like
- Swissprot: Q9SZF7 — SHR_ARATH; Protein SHORT-ROOT
- TrEMBL: A0A1U8B0Y1 — A0A1U8B0Y1_NELNU; protein SHORT-ROOT-like
- STRING: XP_010274383.1 — (Nelumbo nucifera)
- GO:0008356 — Biological Process — asymmetric cell division
- GO:0009956 — Biological Process — radial pattern formation
- GO:0045930 — Biological Process — negative regulation of mitotic cell cycle
- GO:0048366 — Biological Process — leaf development
- GO:0055072 — Biological Process — iron ion homeostasis
- GO:0005634 — Cellular Component — nucleus
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- The GRAS family of putative transcriptional regulators is found throughout the plant kingdom, and these proteins have diverse roles in plant development, including root development, axillary shoot development, and maintenance of the shoot apical meristem (Bolle, 2004). GRAS proteins show conserved residues in the C terminus but contain a variable N terminus with homopolymeric stretches of certain amino acids. It has recently been shown that two GRAS proteins that regulate root growth, SCARECROW (SCR) and SHORTROOT (SHR), interact with each other (Cui et al., 2007), while a class of GRAS proteins involved in regulating plant growth, the DELLA proteins, interact with a transcription factor involved in phytochrome signaling (de Lucas et al., 2008; Feng et al., 2008).
Literature and News
Homologs
- Capsicum annuum: CA02g25280
- Citrullus lanatus: Cla014025
- Gossypium arboreum: Cotton_A_09772_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A02G1453, Gh_D03G0261
- Juglans regia: WALNUT_00019348-RA, WALNUT_00018067-RA
- Manihot esculenta: Manes.12G114100.1.p, Manes.13G111600.1.p
- Nicotiana tabacum: XP_016479901.1, XP_016479900.1, XP_016471877.1
- Populus trichocarpa: Potri.007G063300.1
- Prunus mume: XP_008237911.1
- Pyrus bretschneideri: Pbr024319.1
- Ricinus communis: 29661.m000923
- Sesamum indicum: XP_011073684.1
- Solanum melongena: Sme2.5_00127.1_g00012.1
Sequences
CDS Sequence:
- >NNU_018448-RA|Nelumbo_nucifera|GRAS|NNU_018448-RA
ATGGATACCTTGTTTAGGCTAGTAAGTCTTCAATCTGATCAGTCTATCAATTCCAGTAGAACCTCTAGCAGCTCCAGATCCTCTAGACAAAACCATCCGTACCACCAACAAGAAGAAGAATGCGGCAACTTTTTCATGGATGAAGACGACTTCTCTTCTTCCTCAAAACAATTTTTCCCTTACCAACAGTACCACTATCCATCCACCGCCACGACCTCAACCCCTACCACCACTACTAACACCAGTACTACCACCACTCATGGATTTGAACCCTCTCATGAGTTTGCTTTCAGCTCCCCTTGTCCTGACCTCAACTTCGAATTCGCCTCTACGACGTCCGGTAAATGGGCATCAAACCTCCTTCTCGAGACTGCTAGAGCAATCGCGGATAACAACAGTTCCCGGACCCAACAGCTAATGTGGATGCTCAACGAACTCAGCTCCCCGTATGGTGACACCGATCAGAAGCTTGCTTCATACTTCCTCCAGGCCTTGTTCAGCCGGATGACCGACTCCGGCGAGCGATGCTACCGGACCTTAGCATCAGCGTCGGAGAAGACGTGTTCCTTCGATTCCACCAGGAAAATGGTACTGAAGTTCCAAGAGGTAAGCCCATGGACTACTTTTGGACATGTAGCTAGCAACGGTGCAATCTTGGAGGCCTTTGATGGGGAAAGCAAATTACACATAGTGGACATAAGCAACACGTACTGCACCCAGTGGCCTACTCTGCTGGAAGCCTTAGCCACGCGCACCGACGAGACGCCGCACCTACGTCTCACCACCGTGATGGCCAACAGACCCTCCTCAAGCTCCGGTGGCATAGCGGCTGTGCAAAAAGTAATGAAAGAGATTGGAAATCGAATGGAGAAGTTCGCCCGGCTCATGGGTGTGCCTTTCAAATTCAATGTAGTGCACCACGTAGGCGACTTATCCGATCTGAACTTAGCTGAATTGGACATTAGAGACGATGAAGCACTGGCTGTCAACTGTATCGGCACATTACATTCAGTAACCACAGTTGATAACCGCCGTGACATCATCATATCCACGTTTCGGAGGCTGCGGCCGAAGATTGTTACCGTCGTGGAGGATGAAGCCGATCTTGACGTCGGTGCCGACGGATTTGACTTTGTCAAAGGGTTTCAGGAGAGCTTGAGATGGTTCAGGGTGTACTTTGAGTCTCTAGACGAGAGCTTCCCGCGCGCCAGCAACGAGTGTTTGATGCTCGAACGTGCAGCCGGGCGTTCACTTGTCGATCTCTTGGCCTGTTCCCCTGCCGAGTCAAGCGAGCGACGCGAGTCAGCAGCTCGCTGGTCACAGCGTCTGCACGCGGCTGGATTCAGCCCTTTCGCGTTTAGTGATGACGTGTCTGATGATGTGCGTGCGCTTCTAAGGAGGTATAGAGAAGGTTGGTCGATGATACCTGGATCCGATGCCGGAATTTTCTTGGCATGGAAAGAGCAGCCGGTCGTATGGGCTTCTGCTTGGAAGCCTTAA
Protein Sequence:
- >NNU_018448-RA|Nelumbo_nucifera|GRAS|NNU_018448-RA
MDTLFRLVSLQSDQSINSSRTSSSSRSSRQNHPYHQQEEECGNFFMDEDDFSSSSKQFFPYQQYHYPSTATTSTPTTTTNTSTTTTHGFEPSHEFAFSSPCPDLNFEFASTTSGKWASNLLLETARAIADNNSSRTQQLMWMLNELSSPYGDTDQKLASYFLQALFSRMTDSGERCYRTLASASEKTCSFDSTRKMVLKFQEVSPWTTFGHVASNGAILEAFDGESKLHIVDISNTYCTQWPTLLEALATRTDETPHLRLTTVMANRPSSSSGGIAAVQKVMKEIGNRMEKFARLMGVPFKFNVVHHVGDLSDLNLAELDIRDDEALAVNCIGTLHSVTTVDNRRDIIISTFRRLRPKIVTVVEDEADLDVGADGFDFVKGFQESLRWFRVYFESLDESFPRASNECLMLERAAGRSLVDLLACSPAESSERRESAARWSQRLHAAGFSPFAFSDDVSDDVRALLRRYREGWSMIPGSDAGIFLAWKEQPVVWASAWKP