Information report for Lsa002170
Gene Details
Functional Annotation
- Refseq: XP_023751849.1 — protein SHORT-ROOT-like
- Swissprot: Q9SZF7 — SHR_ARATH; Protein SHORT-ROOT
- TrEMBL: A0A2J6M4Q2 — A0A2J6M4Q2_LACSA; Uncharacterized protein
- STRING: XP_004174016.1 — (Cucumis sativus)
Family Introduction
- The GRAS family of putative transcriptional regulators is found throughout the plant kingdom, and these proteins have diverse roles in plant development, including root development, axillary shoot development, and maintenance of the shoot apical meristem (Bolle, 2004). GRAS proteins show conserved residues in the C terminus but contain a variable N terminus with homopolymeric stretches of certain amino acids. It has recently been shown that two GRAS proteins that regulate root growth, SCARECROW (SCR) and SHORTROOT (SHR), interact with each other (Cui et al., 2007), while a class of GRAS proteins involved in regulating plant growth, the DELLA proteins, interact with a transcription factor involved in phytochrome signaling (de Lucas et al., 2008; Feng et al., 2008).
Literature and News
Homologs
- Capsicum annuum: CA02g25280
- Citrullus lanatus: Cla014025
- Cucumis melo: MELO3C007630P1
- Cucumis sativus: Cucsa.103160.1
- Daucus carota: DCAR_010820
- Fragaria vesca: mrna05757.1-v1.0-hybrid
- Juglans regia: WALNUT_00018067-RA, WALNUT_00019348-RA
- Malus domestica: MDP0000840369, MDP0000822651
- Manihot esculenta: Manes.12G114100.1.p
- Nicotiana tabacum: XP_016479901.1, XP_016479900.1
- Petunia inflata: Peinf101Scf00337g05006.1
- Prunus mume: XP_008237911.1
- Prunus persica: Prupe.6G220800.1.p
- Pyrus bretschneideri: Pbr024319.1
- Ricinus communis: 29661.m000923
- Sesamum indicum: XP_011073684.1
- Solanum melongena: Sme2.5_00127.1_g00012.1
Sequences
CDS Sequence:
- >Lsa002170|Lactuca_sativa|GRAS|gnl|UG|Lsa#S58688420;PUT-187a-Lactuca_sativa-21521
NNCATAAACATAAAACACCCCCTTCTCGAATTTAACTTGAATACCTACGATACAACCTACAAAAACACACATTACCTTACCTTGTATGATAAGACATCTTTCATTTTAACAGGATATTATATGGATACTATGTCCACCCTCCGACACCAACAACTCCTCTCTGATTATCAACAACAACATCATCATCATCATCATCGTCAATCTTTCAACTCCACCGTAAGTTCTAGCAGTCCTAGATCCTCCACCGATCATCAAACAACCACCGGCGCCGGCCATTACTACCAACCACAAGAAGAATGTTTCCCTAGTACTTTCTTCATGGAAGAAGATGATCTCTCTTCTTCTTCCTCATTGCAACAACACTACTACTCTTCTAACCAGTTACAACCCCATTTCCACCACCAGTTTTCCGCCACTCCTACTCCTACTTCCACCACAAGCACCACCACCACTCCTCCTCCACCTCCCAAGACTCATGGTTTTTCTTCTAATTCTGATCATACCAACTTTAACTACTCGTCTTCCCAGGATCATATCGCTATGGAGTTTTCGAATTCGTTCTCCGCCAACGGCTGGGCGTCGGATGTGTTATTGGAGGCTGCGCGTGCGGTGGCTGATAAGAACAGCACGCGTCTACAGCAGTTGATGTGGATGCTCAACGAGCTCAGTTCTCCCTATGGCGATGTAGATGAGAAGCTTTCTTGTTACTTTCTTCAAGCGCTTTACAGTCGGATGACGGATTCCGGTGAGTTGAATTACCGGAATTTATCGTCGATTTCGGAGAAAGTTAGCACCTTTGAATCAACCAGAGAATTGGTGCTCAAGTTTCAAGAAGTCAGCCCATGGACGACGTTCGGACACGTTGCGTGTAACGGAGCGATCTTAGAGGCGTTAGACGGCGAGACTAAATTGCACATTGTTGATGTCAGCAACACATACTGCACACAGTGGCCGACGTTGCTGGAAGCCATCGCCACCCGGGCAGATGAAGCACCACATCTCCGCCTCACGACGGTGATCTCCTCCAGATCAGCCGGCAGCGACGGAATAGAGAGGATCATGCGAGAAATAGGGAGTCGGATGGAAAAATTCGCCAGGTTAATGGGTGTCCCGTTTAAATTCAATGTGATACACCATATCGGCGATTTATCCGATCTGAATTTTAGTCAGTTAGCTATTCAATCTGATGAAGCTCTTGCTATAAACTTAAATGGCACGTTACGTTCTGTTAGTAATCACCGTAGGGATTATTTGATCTCGATGTTTCGGAGTATGAACCCTAAAATAATGACGATCGTGGAAGAAGAAGCTGATTTGGAAGTGGGGATTGATGGGTTTGAATTCTTGAGAGGATTTCAAGAGTGTTTGAAATGGTTTAGGGTTTACTTCGAAGCTCTCAACGAAAGCTTTCCTCAAACGAGTACCGAGAGATTGATGTTGGAGAGGGAGGCGGGGCGGGCTGTGATGGACTTGGTGGCATGCTCGCCGGCGAATTCCGTGGAGAGGCGGGAGACGGCTAACCGGTGGTCCAGTAGACTTCGTGCAAATGGTTTTGGTGGGGTTTCATATAGCGAAGAAGGGTGCGACGATGTCCGGGCACTGCTGAGGAGGTATAAGGAAGGGTGGTCAATGGCTCCGTCGGAAACGGCGGCCGGAATTTTTTTTGATGCGTAA
Protein Sequence:
- >Lsa002170|Lactuca_sativa|GRAS|gnl|UG|Lsa#S58688420;PUT-187a-Lactuca_sativa-21521
XINIKHPLLEFNLNTYDTTYKNTHYLTLYDKTSFILTGYYMDTMSTLRHQQLLSDYQQQHHHHHHRQSFNSTVSSSSPRSSTDHQTTTGAGHYYQPQEECFPSTFFMEEDDLSSSSSLQQHYYSSNQLQPHFHHQFSATPTPTSTTSTTTTPPPPPKTHGFSSNSDHTNFNYSSSQDHIAMEFSNSFSANGWASDVLLEAARAVADKNSTRLQQLMWMLNELSSPYGDVDEKLSCYFLQALYSRMTDSGELNYRNLSSISEKVSTFESTRELVLKFQEVSPWTTFGHVACNGAILEALDGETKLHIVDVSNTYCTQWPTLLEAIATRADEAPHLRLTTVISSRSAGSDGIERIMREIGSRMEKFARLMGVPFKFNVIHHIGDLSDLNFSQLAIQSDEALAINLNGTLRSVSNHRRDYLISMFRSMNPKIMTIVEEEADLEVGIDGFEFLRGFQECLKWFRVYFEALNESFPQTSTERLMLEREAGRAVMDLVACSPANSVERRETANRWSSRLRANGFGGVSYSEEGCDDVRALLRRYKEGWSMAPSETAAGIFFDA