Information report for CA05g17900
Gene Details
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Functional Annotation
- Refseq: XP_016554161.1 — PREDICTED: scarecrow-like protein 13
- Refseq: XP_016554162.1 — PREDICTED: scarecrow-like protein 13
- Refseq: XP_016554163.1 — PREDICTED: scarecrow-like protein 13
- Swissprot: Q9M0M5 — SCL13_ARATH; Scarecrow-like protein 13
- TrEMBL: A0A1U8F458 — A0A1U8F458_CAPAN; Scarecrow-like protein 5
- TrEMBL: A0A2G2ZK47 — A0A2G2ZK47_CAPAN; scarecrow-like protein 13
- STRING: PGSC0003DMT400021748 — (Solanum tuberosum)
- GO:0010200 — Biological Process — response to chitin
Family Introduction
- The GRAS family of putative transcriptional regulators is found throughout the plant kingdom, and these proteins have diverse roles in plant development, including root development, axillary shoot development, and maintenance of the shoot apical meristem (Bolle, 2004). GRAS proteins show conserved residues in the C terminus but contain a variable N terminus with homopolymeric stretches of certain amino acids. It has recently been shown that two GRAS proteins that regulate root growth, SCARECROW (SCR) and SHORTROOT (SHR), interact with each other (Cui et al., 2007), while a class of GRAS proteins involved in regulating plant growth, the DELLA proteins, interact with a transcription factor involved in phytochrome signaling (de Lucas et al., 2008; Feng et al., 2008).
Literature and News
Homologs
- Nicotiana benthamiana: Niben101Scf01234g01012.1, Niben101Scf04993g05001.1, Niben101Scf02048g00001.1, Niben101Scf02911g07002.1
- Nicotiana tabacum: XP_016487801.1, XP_016483598.1, XP_016490832.1, XP_016448345.1, XP_016460679.1
- Petunia inflata: Peinf101Scf03187g02004.1, Peinf101Scf01292g05002.1
- Solanum lycopersicum: Solyc11g012510.1.1
- Solanum melongena: Sme2.5_05200.1_g00006.1
- Solanum tuberosum: PGSC0003DMP400014817, PGSC0003DMP400023645, PGSC0003DMP400023644
Sequences
CDS Sequence:
- >CA05g17900|Capsicum_annuum|GRAS|CA05g17900
ATGCAAGCATCGCAGAGACCTCAATCATCAGGCGGAGTTCACAAGTTGTACCATCAGCCAACTGCGAAAGTTGAGCAATATTATAGCCCTTACAATGTAGTTAACAACAATTCCAACGATACTAGCAGCTCCGGGACACAGCACTCTTATCAGACACAGAATGAACAGTTTTTCACTCTGGACTCACTGCCTGATGCTGGTTACGTCATCTATGATTCGCCTCCTGCTTTAAGTGTCTCGTCCAACTGGAGTCCCTTCTCTCCTCAATGTACTCAGTCGTACATCTCCGATCAGCATCATTCCTCGGACAACACTAACGGTTCACCTTTGAGCGGGTGTTCGGTAGTTAATGACGGCAATGAACTGAAGCATGTGCTAAGGGAGATGGAGAATAATTTGCTAGGGCCAGATTCTGATATTGATGAAGACAGCAGTTGCTCTTTTAATGATGAGGTCTCAAAACCTTCAAAATGGAATCGATTATTGGAAATAGCGCCCAGCTTAGACATGAAAGAGCTGCTCGTTGCGTGTGCTGAAGCAGTATCGGATGGTGATTTCTCAGTTGCAGAAGCTTTGATGAATGTCCTAGAGCAAAAGGTATCTGTTTCGGGGGAACCTATGCAGCGATTGAGCGCATACATGTTGGAAGGGCTCCGAGCAAGATTATTTTCCTCGGGAAGTATCATATACAAAAAGCTCAAGTGCAACGAACCAACTAGTTCAGAATTGATCTCTTACATGCAAGTCCTCTATCACATCTGCCCTTACTACAAATTCGCTTACACGTCTGCCAACGTTGTGATCGATGAAGCCATGAGGAATGAGAACAGAATCCATATAATTGATTTTCAAATTGCACAAGGAAGTCAATGGATGTTCCTCATGCACAATCTTGCTCGTCGACCTGGTGGACCACCATTTGTTCACATCACAGGTGTTGATGATTCCCAATCGGCTCATGCACGCGGTGGAGGACTTCATCTAGTAGGTGAAAGGCTATCAAAATTTGCTGAATCATGTGGAGTGCCTTTTGAATTCCATGCTGCTGGGATATCGGGCTGTGAGGTTCAGCTGGAAAACATTCATATTAGACACGGAGAAGCCTTGGCAGTGAACTTCCCCTATGTGCTGCACCACATGCCAGACGAGAGTGTAACCACTGTGAACCATCGAGATCGTCTACTAAGACTAGTTAAGAGCTTGTCTCCGAAAATTGTCACCCTTGTTGAACAAGAATCTAACACCAACACTTCTGCTTTCCTTCCAAGATTCCGTGAAACTATGGATTACTATACAGCAATGTTCGAGTCAATTGATGCAGCTCGCCCGAGGGATGACAAGCAGCGGATCAGCGCAGAGGAGCATTGCGTGGCACGAGACGTTGTCAACATAATAGCATGTGAGGGTGCTGACAGAGTGGAAAGACACGAACTTTTTGGAAAGTGGAGTATGAGACTTATGATGGCTGGATTTACTCAATGCCCCTTGAGTCCATCAGTTGGCGAAGCCATCACCGGCGTGTTGAAAGACTTCAGCCCAAATTATCGACTTGCAGAGAGCAAGGGCGCGCTTTATCTTGGATGGAAGAACCGAGCTTTGGCGACTTCGTCCGCTTGGAGATGA
Protein Sequence:
- >CA05g17900|Capsicum_annuum|GRAS|CA05g17900
MQASQRPQSSGGVHKLYHQPTAKVEQYYSPYNVVNNNSNDTSSSGTQHSYQTQNEQFFTLDSLPDAGYVIYDSPPALSVSSNWSPFSPQCTQSYISDQHHSSDNTNGSPLSGCSVVNDGNELKHVLREMENNLLGPDSDIDEDSSCSFNDEVSKPSKWNRLLEIAPSLDMKELLVACAEAVSDGDFSVAEALMNVLEQKVSVSGEPMQRLSAYMLEGLRARLFSSGSIIYKKLKCNEPTSSELISYMQVLYHICPYYKFAYTSANVVIDEAMRNENRIHIIDFQIAQGSQWMFLMHNLARRPGGPPFVHITGVDDSQSAHARGGGLHLVGERLSKFAESCGVPFEFHAAGISGCEVQLENIHIRHGEALAVNFPYVLHHMPDESVTTVNHRDRLLRLVKSLSPKIVTLVEQESNTNTSAFLPRFRETMDYYTAMFESIDAARPRDDKQRISAEEHCVARDVVNIIACEGADRVERHELFGKWSMRLMMAGFTQCPLSPSVGEAITGVLKDFSPNYRLAESKGALYLGWKNRALATSSAWR*