Information report for C.cajan_16001
Gene Details
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Functional Annotation
- Refseq: XP_020220744.1 — scarecrow-like protein 8
- Swissprot: Q9FYR7 — SCL8_ARATH; Scarecrow-like protein 8
- TrEMBL: A0A151T4I3 — A0A151T4I3_CAJCA; Scarecrow-like protein 8
- STRING: GLYMA16G29900.1 — (Glycine max)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0005737 — Cellular Component — cytoplasm
Family Introduction
- The GRAS family of putative transcriptional regulators is found throughout the plant kingdom, and these proteins have diverse roles in plant development, including root development, axillary shoot development, and maintenance of the shoot apical meristem (Bolle, 2004). GRAS proteins show conserved residues in the C terminus but contain a variable N terminus with homopolymeric stretches of certain amino acids. It has recently been shown that two GRAS proteins that regulate root growth, SCARECROW (SCR) and SHORTROOT (SHR), interact with each other (Cui et al., 2007), while a class of GRAS proteins involved in regulating plant growth, the DELLA proteins, interact with a transcription factor involved in phytochrome signaling (de Lucas et al., 2008; Feng et al., 2008).
Literature and News
Homologs
- Arachis hypogaea: Ahy011152
- Cicer arietinum: XP_004512836.1, XP_004496533.1
- Fragaria vesca: mrna13212.1-v1.0-hybrid
- Glycine max: Glyma.16G179900.1.p, Glyma.10G232000.1.p, Glyma.20G162100.1.p
- Gossypium arboreum: Cotton_A_02423_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D11G0108, Gh_A11G2960, Gh_D09G1715
- Lotus japonicus: Lj2g3v0342790.1, Lj5g3v1988830.1
- Manihot esculenta: Manes.06G151400.1.p, Manes.14G023500.1.p
- Medicago truncatula: Medtr6g047750.1
- Prunus mume: XP_008234852.1
- Prunus persica: Prupe.2G299400.1.p
- Ziziphus jujuba: XP_015878424.1
Sequences
CDS Sequence:
- >C.cajan_16001|Cajanus_cajan|GRAS|C.cajan_16001
ATGAACAACCCCAACGCGGCTCCTTCCTCTGCCACCTCCAACCTCCACCCTCTCTACCGAACCCAGCAGAACCTCCCTGCAATGTTTCTAGATCCTTCCTCGCAGATCGCACAACACCAAACACCAACCTTCTTAGGTAGCAAACGCTCCCACACCGAATTCCAAACCTACAACCAAACCAACAACAACCACAACCACAACCACAACCACGTTCTCTCGAACTTCCTGCTTCGTTCTGTTAAGCCCCGAACCTCTTTCTCCCATAGCTCCCCTCTCTCACCCATGGATTTTCCTATTCCCGAATTACAACATCAAAGCCAAAACCAAAATCCTTCAGTTTACCACCACCAAACGCCGCGTTTTGGTGTTCCCTTACTCCACCAGCTCCGCCCTCAGCCCATTAACCTCCCCAACAACGGGCCCGGACACATGAATGGCCCAAATTTGGGTTACCGAAACTCGAATTTAGGTTTACCGCAGAACCGGGTTAACCTTTCTGTTCCTGGACCGGTTCACCGGAGTGAGCCGGAGAAGATCATGGACCACCGGCTTCAGGAATTGGAGAAGCAGCTTCTGGAAGACAACGATGAAGAAGGAGAAGCCGATGCTGCCTCCGTGATAACCACCAGCGAGTGGTCGGAGACTTATCAGAATTTAATCAGTCCCGGTCCCGGTCCGGTTCAGAAACCGGTTCCCACGACGACGTCGCCGACTTCTTCCACCACGTCGTCTACATCATCGTCTACTTCTGTTGCTTCGCCTGCCTCGGGATGCTCCAAACAGACGCTAATGGACGCCGCATATGCAATTGTTGAAGGAAAACACGATGTGGCTATGGAGATCCTGAACCGTTTCAATGGTTCTCTGAACCGTTCTGATAGGTTGACCGATTGCATGGTTTCAGCCTTGAAATCAAGGATGAATCCGGTGGAATATCCTCCACCGGTGGCTGACCTTTTCGCCAGAGAACACACCGAGTCGACTCAGCTGCTTCTGGAAAACTCGGTTTGCTTCAAGGTAGGGTTCATGGCTGCGAATCTCGCGATCCTCGAAGCCGCATTTGAGGAGAAAACAGACAACAGGTTCTGCGTGGTGGATTTCGAGATTGGACAGGGAATGCAATACATGCATCTCCTCAGCGCGGTTCCTGCCGGCGCCACGGTGAAGATCGTGGCGGTGGCGGAGAAAGGCGGCGAGGAGAGAGTCCTCGCGGTGGGGGAGATGCTGAGCCGGCATGCGGAGCGGCTGAGGATTGGATTCGAGTTTAAACTCATCGCAACTCAGAAACTCGCCGAGTTGACTCGCGAGTCCTTGGGATGTGACGCGGACGAGGTTCTCGCGGTGAACTTGGCGTACAAGCTGAACAGGATTCCCGACGAAAGCGTCTCCACTGAGAATCCTCGTGACGAGCTTCTTCGGCGCGTGAAGCGACTCGCCCCGCGCGTGGTGACTGTGGTGGAGCAGGAAATGAACGCTAACACAGCGCCGTTTTTGGTGCGCGTGGCGGAAACGCTTTCTTACTACGGCGCGTTGTTGGAATCCATTGACAACAACCCTGACAGAGTCAAGGTCGAGGAAGGACTGAGTCGTAAACTGTGTAACTCGGTGGCGTGTGAGGGAAGGGACCGGGTGGAGCGTTGCGAGGTTTTCGGGAAATGGCGCGCGCGTATGAGCATGGCGGGGTTTCAGCTGAAGCCACTGAGTCAAACCATTGCCGAGTCAATTAAATTGCAACTCGCTTCGGGTAACACCCGTGTCAACTCGGCACTCACCGTGAAGGAAGAGAATGGTGGGATTTGCTTTGGTTGGATGGGAAGAACACTCACAGTCGCATCAGCGTGGCGTTAA
Protein Sequence:
- >C.cajan_16001|Cajanus_cajan|GRAS|C.cajan_16001
MNNPNAAPSSATSNLHPLYRTQQNLPAMFLDPSSQIAQHQTPTFLGSKRSHTEFQTYNQTNNNHNHNHNHVLSNFLLRSVKPRTSFSHSSPLSPMDFPIPELQHQSQNQNPSVYHHQTPRFGVPLLHQLRPQPINLPNNGPGHMNGPNLGYRNSNLGLPQNRVNLSVPGPVHRSEPEKIMDHRLQELEKQLLEDNDEEGEADAASVITTSEWSETYQNLISPGPGPVQKPVPTTTSPTSSTTSSTSSSTSVASPASGCSKQTLMDAAYAIVEGKHDVAMEILNRFNGSLNRSDRLTDCMVSALKSRMNPVEYPPPVADLFAREHTESTQLLLENSVCFKVGFMAANLAILEAAFEEKTDNRFCVVDFEIGQGMQYMHLLSAVPAGATVKIVAVAEKGGEERVLAVGEMLSRHAERLRIGFEFKLIATQKLAELTRESLGCDADEVLAVNLAYKLNRIPDESVSTENPRDELLRRVKRLAPRVVTVVEQEMNANTAPFLVRVAETLSYYGALLESIDNNPDRVKVEEGLSRKLCNSVACEGRDRVERCEVFGKWRARMSMAGFQLKPLSQTIAESIKLQLASGNTRVNSALTVKEENGGICFGWMGRTLTVASAWR