Information report for Thecc1EG015870t1
Gene Details
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Functional Annotation
- Refseq: XP_007039698.1 — PREDICTED: GATA transcription factor 26
- Swissprot: Q8W4H1 — GAT26_ARATH; GATA transcription factor 26
- TrEMBL: A0A061GB10 — A0A061GB10_THECC; GATA transcription factor, putative isoform 1
- STRING: EOY24199 — (Theobroma cacao)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
- GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
- Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Literature and News
Gene Resources
Homologs
- Gossypium arboreum: Cotton_A_07168_BGI-A2_v1.0, Cotton_A_36873_BGI-A2_v1.0, Cotton_A_16593_BGI-A2_v1.0, Cotton_A_16049_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D12G2125, Gh_A08G1484, Gh_D08G1783, Gh_A12G1945, Gh_A09G1763, Gh_A03G0054, Gh_D03G1602
- Manihot esculenta: Manes.01G087500.1.p, Manes.02G044400.1.p
- Populus trichocarpa: Potri.003G082800.1, Potri.001G151700.2, Potri.001G151700.4, Potri.001G151700.1, Potri.003G082800.2
- Ricinus communis: 27940.m000323
Sequences
CDS Sequence:
- >Thecc1EG015870t1|Theobroma_cacao|GATA|Thecc1EG015870t1
ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGTACTCCTCTTTGGCGCAATGGACCTCCTGAGAAGCCAGTATTGTGCAATGCATGCGGTTCACGGTGGAGGACTAAAGGGACACTTGCGAACTATACTCCACTTCATGCTCGGGTTGAACCTGATGATTATGAGGATCATAGGGCGTCCAGAGTGAAGAGCATATCTATAAATAAGAATAAAGAAATAAAACTGCTGAAAAGAAAGCCAAATCATGATACAGCAGTAGTTGCCCCTGATTACAACCAGGGCTTCCGTAAGTTTGTGGATGAAGATACAAGTAATAGATCAAGTTCCGGATCAGCCATATCTAATTCTGAAAGCTGTGCTCAATTTGGCAGTGGAGATGCTAGTGACTTGACAGGGCCTGCTCAATCAAACGTGTGGGACTCCATGGTACCTTCTAAGAAAAGAACCTGTGTAAATCGTCCAAAGCCATCTCCTGTTGAGAAGCTTACAAAAGATTTATATACTATTTTACATGAACAGTCTTCATACTTCTCTGGATCTTCAGAGGAGGATTTGCTTCTTGAGAGTGAAACACCCATGGTTTCTGTTGAGATTGGACATGGAAGCGTTCTAATTAGACATCCAAGCTCAATAGCTCGAGAAGAGGAATCGGAAGCTAGCTCACTCTCAGTTGAAAACAAACAATATTCAATGAACGAGGCTTATTCACATTCTTCAAGCTTCCCTACACATAATGATAGTGAGGGCATCAAATTTTCAGGACATGGATTTGAGAAGGCTAAGAACCCTGCTGGACAAGGGATGCAGCACGAGCAACTTAAGAGGGACAAAGTTCAACATGAAAAATCATTAATCCTGGAAAGTCATAAGTCACCACTGTGTAACATAGATTTAAATGATATTCTCAACTTTGAGGAGTTTGTGAAACACATAACAAATGAGGACCAGCAGCTGTTACTGAAGTATCTACCTCCACTTGACATTGTCAAACTCCCTGACAGCCTCAAGAGCATGTTTGATAGCCCTCAATTCAAGGAGAACTTATGTTACTTTCAGCAACTGCTTGAGGAAGGGGTCTTTAATATCTCCGTCCCAGGGGTGAAAGCTGAAGACTGTAAGACTTTGAAAAGACTTGCATTATTCAATTTGACAAAATCCCACTGGGTGGAACGCCATAATGTACTTAAGAAATATAGAAGTGGTACTGGAGGGTCTGCCATTGCTAGAGGACCAAATGCCATTACATCAAATAATATGATAATTATGAAGAGATCACGTGACAGCCAAAGTCAAAATTTTCCAGAAGCGAGGACTTTAAAGAGCCCCAAAAGGGTGATCATGAAGACAACTTATGAAAACAAAGAGCTCATAGACAATGATGGTTCTTGCTTTAGTCCAAGAAGCCTATTCGCTTTGCCTCCTGATGGTAGCTCTCTCATGCTGGATTCTCTCCATTTTGTTGACGAAAGTTCTGACCATGATTTGCTGCTGGATGTGCCATCCAACGGCTCATTCCCACAGGCAGAACTGCTTCATCCTACTTTAAGTTTTGGCCAACAGGCAAGCACTAGCAGTAGCTCAGCACACCCACATCTTGTCCATCCCTAG
Protein Sequence:
- >Thecc1EG015870t1|Theobroma_cacao|GATA|Thecc1EG015870t1
MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARVEPDDYEDHRASRVKSISINKNKEIKLLKRKPNHDTAVVAPDYNQGFRKFVDEDTSNRSSSGSAISNSESCAQFGSGDASDLTGPAQSNVWDSMVPSKKRTCVNRPKPSPVEKLTKDLYTILHEQSSYFSGSSEEDLLLESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVENKQYSMNEAYSHSSSFPTHNDSEGIKFSGHGFEKAKNPAGQGMQHEQLKRDKVQHEKSLILESHKSPLCNIDLNDILNFEEFVKHITNEDQQLLLKYLPPLDIVKLPDSLKSMFDSPQFKENLCYFQQLLEEGVFNISVPGVKAEDCKTLKRLALFNLTKSHWVERHNVLKKYRSGTGGSAIARGPNAITSNNMIIMKRSRDSQSQNFPEARTLKSPKRVIMKTTYENKELIDNDGSCFSPRSLFALPPDGSSLMLDSLHFVDESSDHDLLLDVPSNGSFPQAELLHPTLSFGQQASTSSSSAHPHLVHP*