Information report for Sobic.010G173400.1.p
Gene Details
|
|
Functional Annotation
- Refseq: XP_002437185.1 — putative GATA transcription factor 22
- TrEMBL: C5Z530 — C5Z530_SORBI; Uncharacterized protein
- STRING: Sb10g022580.1 — (Sorghum bicolor)
- GO:0007623 — Biological Process — circadian rhythm
- GO:0009416 — Biological Process — response to light stimulus
- GO:0009740 — Biological Process — gibberellic acid mediated signaling pathway
- GO:0009910 — Biological Process — negative regulation of flower development
- GO:0010187 — Biological Process — negative regulation of seed germination
- GO:0010255 — Biological Process — glucose mediated signaling pathway
- GO:0010380 — Biological Process — regulation of chlorophyll biosynthetic process
- GO:0030154 — Biological Process — cell differentiation
- GO:0045944 — Biological Process — positive regulation of transcription from RNA polymerase II promoter
- GO:0005634 — Cellular Component — nucleus
- GO:0005667 — Cellular Component — transcription factor complex
- GO:0000977 — Molecular Function — RNA polymerase II regulatory region sequence-specific DNA binding
- GO:0001085 — Molecular Function — RNA polymerase II transcription factor binding
- GO:0001228 — Molecular Function — transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
- GO:0003682 — Molecular Function — chromatin binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
- GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
- Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >Sobic.010G173400.1.p|Sorghum_bicolor|GATA|Sobic.010G173400.1.p
ATGTCTGCCATCTACATGAGCCAGCTCTCCACTGCTCTCCCTCTCATGGAGGGAGATCACCACCACCACCACCACCACCACCACCAAGGCCACTTCCAAGCCTTCACGCTGCCAAAGGATCCCCCAATCCTTTTCCCCTTTGTGATCAGCAATAGTAGCGCCAGCGAAAGCAGTCTGAGCTATGGATCGGCAGATCATCACTTGTTGAGGCAGCATCGTCAAACTATGCTCGAGCCCCAACATATGATTGGTGGATCGTCATCAGCTGCGAGTAGTGTCTTTGCGACGCCGTTCCCGACTGTGGAGAGCATCCGTGACGACATGATCGAGCCTGCCTCGTACGATCCATACGATATGGGGAAGCTGCACCAGGTGGTCGGTGGCGGGTCGTCGATGGATGCTTGCAGCTGGACGCCGCCGGCGGCCAAGATGAGGATCACGAGGAAGGCCACTGCCGCCGATCCCAGTGGTGCCGGGAAGAAGCCGAGGAGAAGGGCGCATCAGGCAGCAGGGTACGACGCCGACATCAACATGAGCGGCCAACCAAATTTGGGTGTTATTAGGGTGTGCTCCGACTGCAACACCACCAAGACGCCCTTGTGGAGGAGTGGTCCTTGCGGCCCCAAGTCGCTCTGCAACGCGTGCGGTATCAGGCAGCGGAAGGCACGGCGGGCGATGATGGCCGCCGCGTCTACCTCCGGGCCAGCAGCAGTGCCCGCCACCGACAGCGATAAGGCCTCGCCGAGCAACGCCGCCGGGGCCGCAGCAGCACACCCCAAGGTGAAGAAGGAGAAGAGATCAGTGGACGTGGACCGGTCGCTGCCGTTCAAGAAACGGTGCAAGGTGGTCCAGGTCCAGCAGGATCACGCTGCGGCCGTCGCAGCTCCTGCCGCGGCCACTGACAGGCCGGCTGTCGTCGTGCAGCAGGCGGCCACCGCCGCCGAGGTTGGTGACGACGACGCCTGTCCGAGCAGGGACCTGCTTGTCGACGACATTGGTGGGCTCATCAGCTGGAGCAGGAGTCCGCCGGCGGCTCCCGCATCTGCAGATGCTGCCTCCTGCAGTTTCCGGGCGTCGCCGGCGTTGCCGGTGCAGCAGGACGAGATCACGGACGCTGCCATGCTGCTCATGACGCTGTCCTGCGGGCTTGTCCGAAGCTGA
Protein Sequence:
- >Sobic.010G173400.1.p|Sorghum_bicolor|GATA|Sobic.010G173400.1.p
MSAIYMSQLSTALPLMEGDHHHHHHHHHQGHFQAFTLPKDPPILFPFVISNSSASESSLSYGSADHHLLRQHRQTMLEPQHMIGGSSSAASSVFATPFPTVESIRDDMIEPASYDPYDMGKLHQVVGGGSSMDACSWTPPAAKMRITRKATAADPSGAGKKPRRRAHQAAGYDADINMSGQPNLGVIRVCSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKARRAMMAAASTSGPAAVPATDSDKASPSNAAGAAAAHPKVKKEKRSVDVDRSLPFKKRCKVVQVQQDHAAAVAAPAAATDRPAVVVQQAATAAEVGDDDACPSRDLLVDDIGGLISWSRSPPAAPASADAASCSFRASPALPVQQDEITDAAMLLMTLSCGLVRS*