Information report for OB06G33840.1
Gene Details
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Functional Annotation
- Refseq: XP_015693694.1 — PREDICTED: serrate RNA effector molecule-like
- Swissprot: Q9ZVD0 — SRRT_ARATH; Serrate RNA effector molecule
- TrEMBL: J3MH90 — J3MH90_ORYBR; Uncharacterized protein
- STRING: OB06G33840.1 — (Oryza brachyantha)
- GO:0000381 — Biological Process — regulation of alternative mRNA splicing, via spliceosome
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0010267 — Biological Process — production of ta-siRNAs involved in RNA interference
- GO:0031053 — Biological Process — primary miRNA processing
- GO:0048367 — Biological Process — shoot system development
- GO:0048509 — Biological Process — regulation of meristem development
- GO:2000011 — Biological Process — regulation of adaxial/abaxial pattern formation
- GO:0005730 — Cellular Component — nucleolus
- GO:0005829 — Cellular Component — cytosol
- GO:0005846 — Cellular Component — nuclear cap binding complex
- GO:0009507 — Cellular Component — chloroplast
- GO:0010445 — Cellular Component — nuclear dicing body
- GO:0016607 — Cellular Component — nuclear speck
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0005515 — Molecular Function — protein binding
- GO:0008270 — Molecular Function — zinc ion binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
- GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
- Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >OB06G33840.1|Oryza_brachyantha|GATA|OB06G33840.1
ATGGCCCGGTACGAGGAGCACGCCCACGGGCACGGGCACGGGCACGAGGCGGAGGATGAGGACGATGAGGAGGAGGACGAGGAGGAGGTGGAGATGGAGGAGGACGAGGACGGGGAGGGCCGTCATCACGAGGGGGGCGGCAGCGCCGAGGAGGGCGTCCCCATGGACGCGGATGCCGCCGCCGCCACGCTGGGGGCGCAGATGGACCAGCACGGCGCGATGGTCGCCGCCGCTGTCCCGGCCATGGCGTCCAACCAGCTCACCCTCTCGTTCCAGGGCGAGGTCTACGTCTTCGACTCTGTCTCCCCTGACAAGGTGCAAGCAGTGCTTCTGCTCCTCGGTGGAAGGGAGCTGAACCCAGGTTTGGGCTCTGGAGCATCGTCATCTGCGCCATACAGTAAGAGGTTAAATTTTCCACACCGGGTGGCATCCTTGATGCGGTTCAGAGAAAAGCGGAAGGAGCGGAACTTTGATAAGAAGATCCGGTATTCTGTTCGGAAAGAAGTTGCACTTAGGATGCAGCGTAATAGAGGCCAGTTTACATCTTCAAAACCAAAGGGAGATGAAGCGACATCAGAATTGACAGCTCCAGATGGCTCCCCAAACTGGGGATCAGTGGAAGGTCGGCCTCCTTCTGCTGCTGAATGCCACCACTGTGGTATAAGTGCAAAGGCTACACCTATGATGCGCCGTGGACCTGATGGGCCAAGAACATTATGCAATGCTTGTGGCCTCATGTGGGCAAACAAGGGCATGTTGAGGGACCTATCAAAAGCTCCTCCTACACCTATTCAAGCTATCCCATCAGCTAATGATGGTAATGGAAGTGCTGGAGCACCTACCACCGAGCAAGAAATTCCTACACCAGCCACTGCAAATGGTCATGAATCATCAACACTAGATATCGTTGACAGAAATTGCACTTTGGACCAGATGGTTAACACGTATGGGTATGATTACGAGCGAGGCGGAGGAAGGGGTGGGTATGATGACGACCGATACCATGGCAGGTATCAGAATCGTGCTGCAGATTGGCCTGATTCAGGGTTTGGGGCATCCAATGATGGTCCTGGGATTACCCAAAGGGAAGGCTTGATGACCTACAAACAGTTCATGCAAGTTCTTGAGGATGATATTCTACCTGCTGAAGCTGAGAGACGGTACCAAGAATACAGGACAGAGTACATCACTACCCAAAAACGTGCTTATTTTGACATTCACAAGAATGATGAGCTATTGAAAAACAAATACCATCCGACCAATTTATCATCTGTTATTGACAGTAGGAATGCACGTTGTAAGGGAGTAGCAAGTAATTTCTTTCATGATTTGCAAAATGGAACTCTGGACCTTGGCCCTGGAATAACTGCGGCTGCAGCAAGTAAAGCAGCAAGTGGCAGTGATGGAAACACTGATGATGATGGAGACAATGACAAGAGGAGAAAGCATGGTAGGATCTCCTCGAAAGAAACAGACCCTCTTTCTGGTGCTCCCGTGGCTCATCCAGTAAGCTCTGAATCTCGACGGGTCCAAGTTGACATTGAACAAGCTCTGGCCCTTGTGCGTAAGCTTGACACTGAGAAGGGTATTGTGGGGAATATCCTATCAAGTGGTGATCATGACAAATCAGATGTGGACAAGTCTCATATTGGATCTATGGGACCTATAATTATAATCCGAGGCTTAACTACTGTCAAAGGCCTTGAAGGTGTTGAGCTCCTAGATACTCTTCTTACCTATTTATGGCGCATTCATGGTGTTGATTACTATGGCATGTCTGAGGCAAATGAACCAAAAGGCATTCGCCATGTGAGAGCAGACAGTAAGGCGTCTAATACAACTAATATCAATGCCGCTGATTGGGAAAAGAAGCTGGATACTTTCTGGCAGGAAAGGCTGATTGGTCAGGACCCCATGGTAATATTAGCAGCCAAGGACAAAATCGATGCAGCAGCAGTTGAAGTTCTCGAACCTTATGTCAGGAAGATAAGGGATGAAAAGTATGGATGGAAATATGGCTGTGGAGCCAAGGGCTGTACAAAGCTTTTCCATGCTCCTGAGTTTGTACACAAGCATTTGAGGCTGAAGCATCCCGAGCTTGTGATAGAGTTGACTTCCAAAGTCCGAGAGGATCTTTATTTCCAAAATTACATGAATGATCCTAATGCACCTGGTGGAACCCCAGTCATGCAACAGTCTGCACCAGACAAATCAAGACAGAGACCTGGTATGGATAATCGTCTGAGATATGACCGTGCCAATCGTAGAGAATATGATAGGGCGGAGAGAGATGGAGGCAGATATAGTAGAGGCGATCGTTCTCCAAGTCGTGATGGCGCTGATGATCAGATGTTTGATGCTTTCCGTGGGCGAGGTCCAAATGCTCCTTTTGTTCCTGAAATCCCTGCTCCCCCAATTTTGATGCCTGTTCCTGGTGCTGGTCCGCTGGGTCCATTTGTTCCCGCACCTCCAGAAATAGCCATGCATATGTTGAGAGAGCAAGGGCCGCCACCTCCATTTGAACCGAACGGTCCTGCTCATGGCAACGCAGGAGTGCTAGGACCAATGATGGGCGGTCCTGCACCAATTATAACTATGCCTCCATCTTTTCGCCATGATCCTCGTCGTTTGCGAAGTTATAACGACCTTGATGCTCCGGACGAGGAAGTTACCGTTCTTGACTACAGAAGTTTGTAG
Protein Sequence:
- >OB06G33840.1|Oryza_brachyantha|GATA|OB06G33840.1
MARYEEHAHGHGHGHEAEDEDDEEEDEEEVEMEEDEDGEGRHHEGGGSAEEGVPMDADAAAATLGAQMDQHGAMVAAAVPAMASNQLTLSFQGEVYVFDSVSPDKVQAVLLLLGGRELNPGLGSGASSSAPYSKRLNFPHRVASLMRFREKRKERNFDKKIRYSVRKEVALRMQRNRGQFTSSKPKGDEATSELTAPDGSPNWGSVEGRPPSAAECHHCGISAKATPMMRRGPDGPRTLCNACGLMWANKGMLRDLSKAPPTPIQAIPSANDGNGSAGAPTTEQEIPTPATANGHESSTLDIVDRNCTLDQMVNTYGYDYERGGGRGGYDDDRYHGRYQNRAADWPDSGFGASNDGPGITQREGLMTYKQFMQVLEDDILPAEAERRYQEYRTEYITTQKRAYFDIHKNDELLKNKYHPTNLSSVIDSRNARCKGVASNFFHDLQNGTLDLGPGITAAAASKAASGSDGNTDDDGDNDKRRKHGRISSKETDPLSGAPVAHPVSSESRRVQVDIEQALALVRKLDTEKGIVGNILSSGDHDKSDVDKSHIGSMGPIIIIRGLTTVKGLEGVELLDTLLTYLWRIHGVDYYGMSEANEPKGIRHVRADSKASNTTNINAADWEKKLDTFWQERLIGQDPMVILAAKDKIDAAAVEVLEPYVRKIRDEKYGWKYGCGAKGCTKLFHAPEFVHKHLRLKHPELVIELTSKVREDLYFQNYMNDPNAPGGTPVMQQSAPDKSRQRPGMDNRLRYDRANRREYDRAERDGGRYSRGDRSPSRDGADDQMFDAFRGRGPNAPFVPEIPAPPILMPVPGAGPLGPFVPAPPEIAMHMLREQGPPPPFEPNGPAHGNAGVLGPMMGGPAPIITMPPSFRHDPRRLRSYNDLDAPDEEVTVLDYRSL