Information report for mrna20754.1-v1.0-hybrid
Gene Details
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Functional Annotation
- Refseq: XP_011471048.1 — PREDICTED: GATA zinc finger domain-containing protein 5-like isoform X3
- TrEMBL: A0A2P6QRU4 — A0A2P6QRU4_ROSCH; Putative transcription factor C2C2-GATA family
- STRING: XP_004309769.1 — (Fragaria vesca)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
- GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
- Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Literature and News
Gene Resources
Homologs
- Arachis hypogaea: Ahy017995
- Capsicum annuum: CA03g02360
- Gossypium arboreum: Cotton_A_35951_BGI-A2_v1.0
- Malus domestica: MDP0000224540
- Nicotiana benthamiana: Niben101Scf02887g00002.1, Niben101Scf02842g00023.1
- Nicotiana tabacum: XP_016459195.1
- Populus trichocarpa: Potri.001G053500.1
- Pyrus bretschneideri: Pbr006028.1
- Solanum lycopersicum: Solyc09g091250.2.1, Solyc05g053500.2.1
- Solanum melongena: Sme2.5_00507.1_g00010.1
- Solanum tuberosum: PGSC0003DMP400020563
Sequences
CDS Sequence:
- >mrna20754.1-v1.0-hybrid|Fragaria_vesca|GATA|mrna20754.1-v1.0-hybrid
ATGGTGTCACTGGACCCTGATGACTTCTTGGCCGGCCTCGCCGACGTCCCTGACCATCCTAGCCGTCCATTCCCTGAGAAGCTAGCTGAGGAAGAAGAGCTGGAATGGATATCCAACAAGGAGTTGTTCCCCTCCGTCGAAACATGCATGCTGCCGGAGGAGCCACCGGGGCTGCGAAAGGCTATTTCCAATGCCGAGCAGGGCAATGGAGCTCTGTCATTGCAGGAAATGCCGAGCAGGAAAACAAAGCATGACAATGCCAAGGCTAAGAGTATGAGAGTTTGCACATTTTGCGGGGTTGCACAGACCCTGCAGGGTGCCCTGGGAGTATGTAATGTCTGCGGGTTTATCTACAAGTCTGGTAGGTGTTGCGCCGAAGAAGAGAGTCCCAAAGTGCAGAGCATTAAGAGTGACAATGTGAAGAAGAGGATTAAGAGTGACAAGGTGAAGAGCAGTAAGAGTGACAAGGTGAAGAGCATTGAGAGTGATAAGGTGAATAGCATTAAGAGAATGTGCACACATTGTGGGATTTCACAGACTCCGCAGTGGCGGGAGGGTCCCCTTGGACGGAACACCCTGTGTAATGCTTGTGGAATTAGGTATATATCGGGGCGGCTTTGCCCCGAATACCGCCCTGCAAATAGCCCTACGTTCTCGCAGGGGTTGCATTCAAATAATCACAGAAAGATAATGGAGATGAGGAACCAAATATTTGGGATTAAGGGGACGGTGGCGAATCCTGTGGATAAATGCACAAACAGTGAAGCTACCATGACCCTAGAGAAGCTGAAAAACATTTTCCCCAGTGTCGCAACACGGAATATCGTGGAGCAACCAAGCAGAAGTGTCATTGCTGAGCAGCAGAGCCCTATTTCAGTGCTTGAAAACAACACAAACAGCAGCACCACCCTCGTGTCCCATCAACCCCCAAACAAAGTTCTAAGGCAGCAGCACCTGTTCTCTAACCAACTTAACAACAAGCACAACCAGGAAGACACTGCCAAAGTAGAAGTTGAGATAAATAGCACCATTCTCATGAGTTCCCATGGGTCTGTCAAGCTGTCCTACAAAGTGCCAAGCAAAGTTTTGGAGCAACAGCAGCTGTTTAGTTGCCAACCTACCAACAAATGCAGAAAGAAAAACACAGTTGAAGTGAAGAATGAGAGAATCAATGCAACTCTCATGAGTTCCTGTGATAACCTTGAGCCGCCCCACCAAGCACCCAGTGAATTTCTGGAGCATCACCAGCTGTTTAATGACCAACCTATCAACAACTGCAACAATAAACACACTGCCAAAGTAGATTTGACCATGAAAGCAGGGGATATACGGATTGATCAGAGGGTAAGGGACAAGGGTCAGTTCATTGTTTTGATCAGTAAGCTAGGGGAATCCTTGAGTATCGGTTATGTGGTGAAGCAAATCTTAATTTTCTGCCCTGCTGCTTGA
Protein Sequence:
- >mrna20754.1-v1.0-hybrid|Fragaria_vesca|GATA|mrna20754.1-v1.0-hybrid
MVSLDPDDFLAGLADVPDHPSRPFPEKLAEEEELEWISNKELFPSVETCMLPEEPPGLRKAISNAEQGNGALSLQEMPSRKTKHDNAKAKSMRVCTFCGVAQTLQGALGVCNVCGFIYKSGRCCAEEESPKVQSIKSDNVKKRIKSDKVKSSKSDKVKSIESDKVNSIKRMCTHCGISQTPQWREGPLGRNTLCNACGIRYISGRLCPEYRPANSPTFSQGLHSNNHRKIMEMRNQIFGIKGTVANPVDKCTNSEATMTLEKLKNIFPSVATRNIVEQPSRSVIAEQQSPISVLENNTNSSTTLVSHQPPNKVLRQQHLFSNQLNNKHNQEDTAKVEVEINSTILMSSHGSVKLSYKVPSKVLEQQQLFSCQPTNKCRKKNTVEVKNERINATLMSSCDNLEPPHQAPSEFLEHHQLFNDQPINNCNNKHTAKVDLTMKAGDIRIDQRVRDKGQFIVLISKLGESLSIGYVVKQILIFCPAA*