Information report for mrna16150.1-v1.0-hybrid
Gene Details
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Functional Annotation
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
- GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
- Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Literature and News
Gene Resources
Homologs
- Arachis hypogaea: Ahy000856
- Brassica napus: GSBRNA2T00100639001
- Brassica oleracea: XP_013586200.1, XP_013586199.1, XP_013586198.1
- Cicer arietinum: XP_004487098.1
- Glycine max: Glyma.12G174200.1.p, Glyma.12G174200.2.p
- Juglans regia: WALNUT_00004884-RA
- Lotus japonicus: Lj3g3v1075120.1
- Malus domestica: MDP0000338280, MDP0000275252, MDP0000166889
- Populus trichocarpa: Potri.004G211800.1
- Prunus mume: XP_008245237.1, XP_008245238.1
- Prunus persica: Prupe.6G102900.1.p, Prupe.6G102900.2.p
- Pyrus bretschneideri: Pbr008403.1
- Raphanus raphanistrum: RrC12882_p1
- Ricinus communis: 27538.m000326
- Ziziphus jujuba: XP_015874418.1
Sequences
CDS Sequence:
- >mrna16150.1-v1.0-hybrid|Fragaria_vesca|GATA|mrna16150.1-v1.0-hybrid
ATGACAACCGCCTCAACCCGGTGGAACCTCGATAGATCTGCACATCACCGACGAATGACCTTTGTCATCACCGTCTCGAACTTATACGAGACGATGAGGCTGATTGGAGAAGGTGTGGCCGGTGAGGACAAGGCACTGATCGGAGGATCGAAAGAGGCGCCGAGCAGGAGGCGGACGACGTCGTTGGAGTTGGTTGGACCTTGTAGATCCGGCAGCACGTTGAGAAGATGCAATCAAGGCCGAGCCGGAAGTCGCGTCGAGACGGCGGCGGCTTTGTCATCGCGGCACAAAAGCCACAGAGAGAGCCATCTCCTCCTCCTCCTCCTCCTCTTCTCTCTCCGCACCACCACCACCTCTCTCTCACTTCTGACCAAGACAATGACGGCCGTCTCCGCTGACGTAACCAAGCTCCCAAAGCGTGAGGTCTTGGATTGTCTTTTTGAACTGGTATATATTTACCACCGTGTTGTTCTTGTGGCTTGTCTACATCATATCCTAACTGTTTCTTTCTTTGCTTCCTTTGTTAAATCTATACTGTCTTTGAAACAGAGTACTACTATGGATGCTTTGCCTTTGGATGATAACATTAACCAACTGTTGGAGCACTTTTACGATGACGATACCATTAAGGCTCTTGATTTCCCCATGGAGGACATTGATGCCACCGACGAGGATTGGAAGACTCAACTCCAGGGACTTGAGCCGTACTATGAATCGAGTTTCCAGTACCTTTCCACTTCGTATGAAGGTACTTCGGGTGTAACTGCTATAACCACCAGCGGCAGAAGCAGTCTCCAAAGCAACGATTTCTTTGATCAAAAGCACATGCACCTGATCCCAACCCATAGTCCGGTGTCTGTCCTTAAAAGCCAGAGTGAAAGCCAAAGTTCTGGCTCGGCTCAACACCTGAGACCCTTGGAGCCTAATTTCATGAACATCAGAGCCCCCGAACCCAGTTTCGTCAACCCGGTGAAGAAGAAGCGTACACAATGCAGGCGTGCACGCCCTGCTAATTTCAGTCACCGGTTCACCTTCCCATGTGTGTCGTCCAATTCCAGTGTCTCCGACAATTTTTATCGTTTTGAAACCTTTCTGACTGAGGAGATGTTGAATCCTGACAAGAGAAGACAGAAGAAAAAGAATCCCTCCTTTCAGGAAACGGGTGAGATTAGTGAAACCAAAAGATGCGTGGAACCAGGCGAGAATCGAGAGACTAAAAGATGTACGCACTGTGCGGTTACGAAGACCCCACAGTGGAGGGAAGGGCCACTGGGGCCTAAGACCCTCTGCAATGCATGTGGAGTTCGTTACAGGTCTGGCCGCCTCTTTCCCGAGTACCGCCCTGCAGCAAGCCCTACGTTCGTTCCAGCAGTGCATTCAAACTCCCACAAGAAGCCGACACCTCTTGAGAAGAGTGTAGCCACGCAGATCCTTCTCTGCCGGTGGAGCTCATCCCGCAACCGCCCCAAGTTTCAATTTGGATTGACTGGAGCGGAGGCAGGAGGTGGGAGAGGTCACAACCTTTGTGAGGTCTCGAATCTGGCCATCTTGGTTCGGTTTGGGCAACGGAGAGGTTGTATGACTGTGGTTAAAATCCAGGGACTTTCTCCCGCTCTATTCGCTGATGTGATTGCCAAGGTTGTTGGTGAAACAATTGGACTAGTTTTGCATGTAAAGCAAGCTGGCATAAGATGCGGAGGGGCCCAGTTCAAGTACGAATGTCTGTTTGATCGCTACAAGGAGTGCGAAATGAATTTCGTTCATCTGTTGGGAATTGTGGAAGAGTCGTTGTCATTTCCTCTATCAAGCTGTAAGAACCCATCATTTGGGAATTGTTTTAGGGGCAGAGAGTGCAGCTTTGGAATTCCTGGAGACCATAAGTACGAGAATCAGGATGACACCTACTCTTACAGTACTTCCCTCCCTCTCTCTTTCTCGCTTCTACCTCCCTCTTCTCCACTACCAACGCCACCGATATATATCTTCATTCCCTACCAAATGCAAACACTTCAAACAGTTCAACCTCTCCTCCGCAAAGGTCACAGATCATCCAAAGCCAACCCCATACCAATATCCATACCCTCCAAATCCCAAACAACAATCCCAATCCCATTCATTCATCCATTGATCTATGTGACAACATCCACACTACTCAGACATGTTCCCGCCCCACCCAGGCCAATGTCCATCACCATCATATTGATCACACAGTTGGAGGCAGCGGGTCAGAAATCTTTGAACATCATCCGACCCTCTCCCCTCGGACCAAATATATACCCATCGTACCCTGATTCTTGGATAGTTGACACTAACCTTGTTGGGCTCGGAAATGTTGTGAGAAATGATCATGGTTCTCTAATTTATGGAGCTTCTCATTGCTGCTGTGCAAGCTCGGCAATTGGAGTGGAAGCCCAAGCAGCTATTGTAGCTCTCTCCTTCGCCAAGAATTACTTCCATTTTCCTACACAAATTGAGCCGACTGCCAAGAATTAG
Protein Sequence:
- >mrna16150.1-v1.0-hybrid|Fragaria_vesca|GATA|mrna16150.1-v1.0-hybrid
MTTASTRWNLDRSAHHRRMTFVITVSNLYETMRLIGEGVAGEDKALIGGSKEAPSRRRTTSLELVGPCRSGSTLRRCNQGRAGSRVETAAALSSRHKSHRESHLLLLLLLFSLRTTTTSLSLLTKTMTAVSADVTKLPKREVLDCLFELVYIYHRVVLVACLHHILTVSFFASFVKSILSLKQSTTMDALPLDDNINQLLEHFYDDDTIKALDFPMEDIDATDEDWKTQLQGLEPYYESSFQYLSTSYEGTSGVTAITTSGRSSLQSNDFFDQKHMHLIPTHSPVSVLKSQSESQSSGSAQHLRPLEPNFMNIRAPEPSFVNPVKKKRTQCRRARPANFSHRFTFPCVSSNSSVSDNFYRFETFLTEEMLNPDKRRQKKKNPSFQETGEISETKRCVEPGENRETKRCTHCAVTKTPQWREGPLGPKTLCNACGVRYRSGRLFPEYRPAASPTFVPAVHSNSHKKPTPLEKSVATQILLCRWSSSRNRPKFQFGLTGAEAGGGRGHNLCEVSNLAILVRFGQRRGCMTVVKIQGLSPALFADVIAKVVGETIGLVLHVKQAGIRCGGAQFKYECLFDRYKECEMNFVHLLGIVEESLSFPLSSCKNPSFGNCFRGRECSFGIPGDHKYENQDDTYSYSTSLPLSFSLLPPSSPLPTPPIYIFIPYQMQTLQTVQPLLRKGHRSSKANPIPISIPSKSQTTIPIPFIHPLIYVTTSTLLRHVPAPPRPMSITIILITQLEAAGQKSLNIIRPSPLGPNIYPSYPDSWIVDTNLVGLGNVVRNDHGSLIYGASHCCCASSAIGVEAQAAIVALSFAKNYFHFPTQIEPTAKN*