Information report for mrna14763.1-v1.0-hybrid
Gene Details
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Functional Annotation
- STRING: XP_004305638.1 — (Fragaria vesca)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0009793 — Biological Process — embryo development ending in seed dormancy
- GO:0009909 — Biological Process — regulation of flower development
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
- GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
- Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_24163
- Cicer arietinum: XP_004512046.1
- Glycine max: Glyma.11G068700.1.p
- Juglans regia: WALNUT_00020383-RA
- Lotus japonicus: Lj2g3v1757260.1
- Malus domestica: MDP0000253174
- Manihot esculenta: Manes.01G135900.1.p
- Nicotiana benthamiana: Niben101Scf03660g02005.1, Niben101Scf00005g00003.1
- Nicotiana tabacum: XP_016500814.1, XP_016502681.1
- Populus trichocarpa: Potri.005G122700.1
- Prunus mume: XP_008241682.1
- Prunus persica: Prupe.7G155400.1.p
- Pyrus bretschneideri: Pbr014317.1, Pbr042610.1, Pbr032064.1
- Ricinus communis: 29634.m002146
- Ziziphus jujuba: XP_015890011.1
Sequences
CDS Sequence:
- >mrna14763.1-v1.0-hybrid|Fragaria_vesca|GATA|mrna14763.1-v1.0-hybrid
ATGTACTCCTTCGCCTCCCCTTCTTCCGTCGACTGCACTCTCTCCCTAGGCACTCCCTCCACTCGTCTCACGTCTGATGAAGGAAACGATGACAAGCGCGGCGGACGCCACGAGCGGAGGTCCGTTTCGAACTTCTGCTGGGACCTTTTACAACCAAAACATGCCTCGTCAGCGCCGAAGAACGGGAGCGGCAACCGCGGCGGCGGTGGGAATGGAGATTCGCTTCTGGCTCGCCGCTGCGCTAACTGCGACACCACCTCGACACCGCTCTGGCGAAACGGCCCACGAGGCCCAAAGTCGCTTTGCAATGCTTGTGGAATCCGGTTCAAGAAGGAAGAGAGACGAGCCACCGCCGCAGCCGCCACGTCAGCCAACGGCGCAACATCGTCCGGCAGCCATTCGTGGATGAACAACTCCCAGGCTCAGAAAATGCACTGCTACGCTCCGTCCATGAACGGTAACGAGTTCCGGTTCATGGAAGATCACGACATGATGACGTCTCACGAAACGGCCGACGCCGCCGCAGCCGGCATTCCCTTCCTCTCGTGGCGCCTCAACGTCACAGACAGACCAAGCCTCTTCCGCTGCCCGTTTTCGCCGTCGCCGGCGGTCCATGGTCGTGATCTGAGCTTTGACAGTGAGAAATCCATTCTGCTATATGCTAGGGTTTCTCTACAAGATTGTGCCCTTATTCGGCATATTCTGAAGGTGTATGAAGATGCTTCGGGCCAACAAGTTAGTTTGCAGAAAAGTAGTGTGACTTTCAGTGGCAGTGTGCTTCCCGTTTTACAACAGAGTTTGGTTGATTACCTTGGTATGCCGATTGTGGCTGCCCATGACAAATACCTGGGTATCCCAACTCGAGTGGGACGTTCTCAGAATGATACCTTTGCTTATATCAAGGATAACCTGACAAAGAAGCTAACAGGGAACTCCATCAACTTTGTGCCAAATTTTGGTGGGGTGGAACATATGAGAAAAAAGGAATGCATTAGAGGGCTTGGGATGCTCTGTGTAAACCGAAAGCAGAAGGAGGATACATTGCGGAATGGAATCCAGAGGTTGATTGGTGATGGAATGTTGACGAATGTGTGGGCTGATCCGTGGTTAATGGGCGAGAACTTATTGCCATTTTTTTCTAATATTGTTACTCGAGTCTCTGATCTTTTTGTGAGCCCCGGAGTGTGGGATGTGGCTTTGCTATCTCATTTATTTACATTTCACATTGTACACAAGATTCAAGCATTACCGATCAGTAGCAGAAGTCACTTTAATAAATGGATTTGGGCTCCGGATAGAAAAGGTTTGTTTACGGTAAAGTCAGCTTACCATTTAGCGAGGACAAGGGTTTTGGAAGATCATGTCATGGCTCCTAATCCTTCTGCGCAATTGTGGAATAAGATTTGGAATGCTCCAGTTCCGGGTAAGGCTACTGATGTAGTACCTTTTACCTTGGGTTGGTGGGAAGAGTTTAAATCTGCAATTGTGAAAAGCAGAGGTTGCAATGTCTCACCTCGGGACAGATGGATCACCCCTTCTTTGGGGTACATCAAATTGAATGTTGATGCAGCCTACAACAATGCATCTGGTATGACTAGTTTGGGAGGGGTTTTCCGCGATCATACTGTAGCAATCCAGCATAATCTCTATTCTCTTACCACTGAGACAAATTGCCTGGTCTTGGTTTCGGCCCTTACCAGTGGCTCCCTCGATGATTCTGATCTTGGATTCCTAATTGAAGACTTGCGGGCAAGTTTGTCTACTATTACTGCTACAGTCCGGTTTGTGCGAAGATCAGCAAACAGAGTTGCTTATGTTATAGCCAAAGGCTTTTAG
Protein Sequence:
- >mrna14763.1-v1.0-hybrid|Fragaria_vesca|GATA|mrna14763.1-v1.0-hybrid
MYSFASPSSVDCTLSLGTPSTRLTSDEGNDDKRGGRHERRSVSNFCWDLLQPKHASSAPKNGSGNRGGGGNGDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRATAAAATSANGATSSGSHSWMNNSQAQKMHCYAPSMNGNEFRFMEDHDMMTSHETADAAAAGIPFLSWRLNVTDRPSLFRCPFSPSPAVHGRDLSFDSEKSILLYARVSLQDCALIRHILKVYEDASGQQVSLQKSSVTFSGSVLPVLQQSLVDYLGMPIVAAHDKYLGIPTRVGRSQNDTFAYIKDNLTKKLTGNSINFVPNFGGVEHMRKKECIRGLGMLCVNRKQKEDTLRNGIQRLIGDGMLTNVWADPWLMGENLLPFFSNIVTRVSDLFVSPGVWDVALLSHLFTFHIVHKIQALPISSRSHFNKWIWAPDRKGLFTVKSAYHLARTRVLEDHVMAPNPSAQLWNKIWNAPVPGKATDVVPFTLGWWEEFKSAIVKSRGCNVSPRDRWITPSLGYIKLNVDAAYNNASGMTSLGGVFRDHTVAIQHNLYSLTTETNCLVLVSALTSGSLDDSDLGFLIEDLRASLSTITATVRFVRRSANRVAYVIAKGF*