Information report for mrna12624.1-v1.0-hybrid
Gene Details
|
|
Functional Annotation
- Refseq: XP_004287558.1 — PREDICTED: GATA transcription factor 21
- TrEMBL: A0A2P6RK76 — A0A2P6RK76_ROSCH; Putative transcription factor C2C2-GATA family
- STRING: XP_004287558.1 — (Fragaria vesca)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0007623 — Biological Process — circadian rhythm
- GO:0009416 — Biological Process — response to light stimulus
- GO:0009735 — Biological Process — response to cytokinin
- GO:0009740 — Biological Process — gibberellic acid mediated signaling pathway
- GO:0009910 — Biological Process — negative regulation of flower development
- GO:0010187 — Biological Process — negative regulation of seed germination
- GO:0010380 — Biological Process — regulation of chlorophyll biosynthetic process
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
Family Introduction
- GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
- GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
- Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_38233
- Citrus sinensis: orange1.1g021859m
- Glycine max: Glyma.17G055200.2.p, Glyma.17G055200.1.p
- Lotus japonicus: Lj4g3v2140320.1
- Malus domestica: MDP0000190038, MDP0000131803
- Manihot esculenta: Manes.16G102600.1.p, Manes.03G033200.1.p
- Medicago truncatula: Medtr4g126350.1
- Prunus mume: XP_008242340.1
- Prunus persica: Prupe.7G210100.1.p
- Pyrus bretschneideri: Pbr005051.1, Pbr015599.1, Pbr041453.1
- Ricinus communis: 29912.m005322
- Vitis vinifera: GSVIVT01015204001
- Ziziphus jujuba: XP_015889150.1
Sequences
CDS Sequence:
- >mrna12624.1-v1.0-hybrid|Fragaria_vesca|GATA|mrna12624.1-v1.0-hybrid
ATGGCTCCGCCTTTTCTTCAGCTCAGCACTATTGGAAGCCATGATCATGATCTTGATCAGTATGATCATCATCACCATGACCTCTTCAATTATCTTGAACCTCAATCTTCGTTTTCCTCCACTACTTCCTCTCTTTCTAGTCCCATCTTCTTAAGTCCAGCTCAAGTCCAAGGACCAATATCTGATCACTACTATAGAGAACCGCAAGACTTTCAATTCCAGCTACTGGAGGCTGATCACATTGTTTCGTACGGCGGATCATGTGATCACGATCAAACCCTTGGAAATGAAGGTGAGAAAGGTACTGTGATCAATTTAAGTATTGATCCCAAGCATGGAGCTGATGATGATCACAGAGATCATGAAAATCGAAGTGCTCGTGCTGAGAATATTTCGGTTAAGTGGATGTCTTCGAAGATGAGGATCATGAGGAAGATGACCAACCCGGATCAAACAATTAGCAGTCATAATAATACTACTGCTGCTACTAATGATGGTACTACTGCACGAGTTAACTTCTCAGCATCTCACAACTTTGAAGAGCAGAAGCTGCATCCATTATCACCTCTGGGAACTGACAGCTCATACAGCACGAACCCGATTAGGGTTTGCTCTGATTGCAACACAACCAAGACACCTCTATGGAGAAGTGGACCTAGAGGTCCTAAGTCACTATGTAACGCCTGTGGAATTCGGCAAAGGAAAGCAAGGCGGGCCATGGCGGCGGCAGCGGCGGCAGCAAACAGTACAACCCTAGCGGTGGAGGCGGCGCCATCCATGATCAAGACGAGTAAGGTGAAACTTAAAGACAACAAAACTATTCCATTCAAGAAAAGGTGCCACAAACTTGCTATCTCCCCTTCACCTCGAGGCAAATCGAAGACCAAGCTTCGTTTCGAAGATTTCTCAGTTAGCAGCATGAATCAGAATTCAGGCACTGATCCTCCTCCTCCTCCTACTACTACTACTACCACCACCACCACCACCACAACCTTTCAACGAGTTTTCCCTCAAGACGAGAAGGAAGCCGCGATCCTGCTAATGGCCCTATCTTGTGGACTAGTTCGAGGTTGA
Protein Sequence:
- >mrna12624.1-v1.0-hybrid|Fragaria_vesca|GATA|mrna12624.1-v1.0-hybrid
MAPPFLQLSTIGSHDHDLDQYDHHHHDLFNYLEPQSSFSSTTSSLSSPIFLSPAQVQGPISDHYYREPQDFQFQLLEADHIVSYGGSCDHDQTLGNEGEKGTVINLSIDPKHGADDDHRDHENRSARAENISVKWMSSKMRIMRKMTNPDQTISSHNNTTAATNDGTTARVNFSASHNFEEQKLHPLSPLGTDSSYSTNPIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAAANSTTLAVEAAPSMIKTSKVKLKDNKTIPFKKRCHKLAISPSPRGKSKTKLRFEDFSVSSMNQNSGTDPPPPPTTTTTTTTTTTTFQRVFPQDEKEAAILLMALSCGLVRG*