Information report for MDP0000309902
Gene Details
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Functional Annotation
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0006606 — Biological Process — protein import into nucleus
- GO:0005618 — Cellular Component — cell wall
- GO:0005635 — Cellular Component — nuclear envelope
- GO:0005730 — Cellular Component — nucleolus
- GO:0005829 — Cellular Component — cytosol
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0005515 — Molecular Function — protein binding
- GO:0008270 — Molecular Function — zinc ion binding
- GO:0008565 — Molecular Function — protein transporter activity
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
- GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
- Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT3G06720, AT4G16143, AT1G02690, AT3G05720
- Juglans regia: WALNUT_00022262-RA
- Manihot esculenta: Manes.09G174900.1.p
- Oryza sativa: Imp3, alpha1a;OsIMalpha1a, OsIMalpha1b, alpha2
- Poncirus trifoliata: Ptrif.0005s1181
- Solanum lycopersicum: Solyc10g079660.1.1
Sequences
CDS Sequence:
- >MDP0000309902|Malus_domestica|GATA|MDP0000309902
ATGTCGTTGAGGCCGAACGCGAGGGCGGAGGTCCGCCGGAACAGGTACAAGGTGGCTGTGGACGCGGAGGAGGGGCGGCGTCGGAGGGAGGACAATATGGTGGAGATCAGGAAGAACCGCAGAGAAGAGAGCCTCCAGAAGAAGCGCCGCGAGGGGCTTCAAACCCAGCAATTGCCCTCCAGTCTTCACTCCGCCGGTCTGGATAAGAAGCTAGAGCATCTACCATCCATGGTTGCTGGTGTTTGGGGTGATGAGGGCACTATGCAGCTTGAGGCAACAACCCAGTTTAGGAAGTTGCTTTCAATTGAACGTAGCCCTCCGATTGAGGAAGTCATACAAGCRGGTGTCGTTCCTCGCTTTGTTGAGTTTCTAATGAGGGAGGATTTTCCACAACTTCAGTTTGARGCTGCTTGGGCTCTTACAAATATTGCTTCTGGGACATCTGATAATACAAGGGTGGTAATTGATCATGGAGCTGTTCCGATATTTGTGAAACTGCTCAGTTCTCCGAGTGATGATGTTCGTGAGCAGGCTGTTTGGGCATTGGGAAATGTTGCTGGTGATTCCCCTAGATGCCGTGATCTTGTACTTGGTAATGGGGCTTTGCTTCCATTGCTTTCACAGCTTAATGAGAATGCAAAGCTCTCTATGCTGAGAAACGCAACCTGGACACTGTCAAATTTTTGCAGGGGCAAACCACAGCCTCCATTTGAACAGGTTAAGCCTGCCCTTCCTGCTCTTGCGCGTTTGATTCATTCAAACGATGAAGAAGTCTTGACTGATGCTTGTTGGGCTCTTTCATACCTTTCTGATGGTACAAATGACAAAATCCAAGCCGTTATTGAATCTGGAGTGTGCCCCCGGCTTGTTGAGCTTTTAATGCATCCATCTCCATCAGTTCTCATTCCTGCTCTCCGCACAGTTGGAAATATTGTTACTGGAGATGATATGCAAACTCAGGTTATCATCCAACATCAAGCTCTTCCTTGCCTGCTAAATCTTTTGACTAACAATTACAAAAAGAGCATCAAGAAGGAAGCTTGCTGGACTATTTCAAATATCACAGCCGGAAACAAGGAACAGATCCGGGCTGTAGTTGAGGCTAATATAATCGGCCCTCTTGTTAATCTGCTTCAAAATGCTGAGTTTGATATAAAGAAAGAGGCTGCATGGGCAATCTCAAATGCTACATCTGGTGGTTCTCATGAGCAGATAAAGTTTCTAGTTAGTCAAGGGTGTATCAAGCCGCTGTGTGATCTTCTTGTTTGCCCAGATCCTAGAATTGTTACAGTTTGTTTAGAAGGCCTGGAGAACATTTTGAAGGTTGGTGAAGCCGAGAAGAACTTGGGTACTACTGGAGGTGTGAATCTCTATGCTCAGGCGATTGAAGATGCTGATGGTTTGGAGAAAATTGAGTCTCTGCAGAGTCATGACAATACAGAGATTTATGAGAAGGCAGTAAAGATGCTCGAGACATATTGGTTGGAGGACGAYGATGAAACAATGCCACCAGGTGATGCAGCTCCAACTACGTTCAACTTTGGAGGGAATGACGTTCCAACTGTCCCATCTGAAACATTCCTCAGCAAGGCAATAATCCAGTCAGGTCAGGTCAGGTCAGGTCAGGTCAAGCGTCATGTTATGTTCGAGTCCTGTTGTAGGGTTGAATGTTGTCGGGGGTGGCTGGCTCAGGTGTTTGAACCAGCTGGTTTAAATCGGTTCAGGCTTCCATGGGCTTTGATCATAGGGACATCACCAACACAGATYAAAGGAAAGAACCGGAGTTWTTTTTTTTGGAGTCGTTATTTCCGGTGGTCGGATGGGGTTGCAGAYGGCGTTTTCTCGCACTGGCATGAAGCAATTATGCATATGCACTTTGATGCGGATTCGACCTTCTCTAACTGCCATCAACTTTTTATGGTAATTCAGGATATGAACGTGAAGAATGTGAAGAACAAGAAGTGCTGCACTGACTGYAAAGCCACTGAGACGCCCTTGTGGAGGAGTGGCCCGGCTGGGCCCAAGTCACTGTGCAATGCTTGTGGGATCAGATACAGGAAGAAAATTCCTACTGTGAGTMTGTGCAAGGGACCAAAGAGGTGGAAGAAAGACAAAACATATGCGGCAGCAGCASCACCAGTACWATCACCACCCCAGCCACCACAAACACTGCTGCTTCTGCTTCTGCCACCACCACCACGAGCACCACTGCCAGAAAAGCCAAAATTGGTGGCAGTGGTGGTGAGAAAAATTGGCAAGCGTGTAYGAGAGATAGAAGACAAATTAGACATGAAGGAAACTTATCACTTTCGATGSAACATTCACCTTAAATTCTGTGACATTAATGAGATAAAAATCGTTGGAAAAAGGGTTRGKGCAGTGAGGAATTTGAACTTTCAAGGCAGGCAATACTTCTCAAAGAAACCGGATCGAGCACGCGATCCGCAAGTGTTGCCATTGCCGTCGGTACTCGCAATCCCTACCCACATGAGAACTTTGTCGATGTGCTTTTCATCTTTATCGCAAGTGCCTAGATCATGCAGTGTTTATRGTTTAGCTCATTTTTGGAGTGAAGGTTTTCCCAATTTGAGCAGGACTTGTGGATACAATTGTAACTCTAAGCTACATGATTCCAGAATTTATGCGGTTGATGGAGGAAACAGTAGGAAATGGACTAGAAGATCTCTGACCACAAAAACAGAAGGAAGAAACAAAAGCCCCATAAAACTTAGCCGTGAAATTTTAGATGTAACGGTTTCAACAAGCGCTGCATTAAATATAAATAAAATGGAAACAAGTCAATACCAACAGACTCAACCCTTAGACTTTCGACAGGCAATTGCTCAGAATAAAGACTTAGCCGACTTAGTGACAGTTATTGTTTTCGATATTGAGACTACTGGGTTTAGCAGAGAGAAAGATCGAATCATAGAGATTGCACTTCAAGATCTTGAAGGGGGTGAAAACAGTACTTTCCAGACACTGGTAAACCCTGAACGCAGTGTTCTAAATTCACATGTTCATGGAATTACAACCGATATGGTCAACAGGCCTGATGTTCCAAGGTTCAAGGACCTCTTACCAATCTTAGTCAAGTATGTCAAAAGCCGTCAAAAACCGGGAGGTTGTGTAATGTTGGTTGCTCACAATGCTCGTACTTTTGATGTACCCTTCRTTAGAAGTGAATTCCTTCGCTGTTCCGTAGATATTCCTTCAACTTGGCTGTTCAGGGATACCATGCCTTTGGGACGTGAAGCAATGAAGTCTGAAGGATCATCTTCAAGAAGTATATCGTTGCAAGCCCTTCGTGAGCACTTCCAGATTCCATTGGATGGTACAGCTCACAGAGCCATGGCCGACGTGAAAGTGCTGTCAGCAGTTTTACAAAGGCTGACTTGTATTCTGAAACTCCCACTTTCCAGCCTTGTTGGAGAAGCTTTCTTAGCGTCGGAAACTGGCACTGCAAAGAAAAAGGGTTCCAGATAG
Protein Sequence:
- >MDP0000309902|Malus_domestica|GATA|MDP0000309902
MSLRPNARAEVRRNRYKVAVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQTQQLPSSLHSAGLDKKLEHLPSMVAGVWGDEGTMQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSDNTRVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLGNGALLPLLSQLNENAKLSMLRNATWTLSNFCRGKPQPPFEQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIESGVCPRLVELLMHPSPSVLIPALRTVGNIVTGDDMQTQVIIQHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKEQIRAVVEANIIGPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGTTGGVNLYAQAIEDADGLEKIESLQSHDNTEIYEKAVKMLETYWLEDDDETMPPGDAAPTTFNFGGNDVPTVPSETFLSKAIIQSGQVRSGQVKRHVMFESCCRVECCRGWLAQVFEPAGLNRFRLPWALIIGTSPTQIKGKNRSXFFWSRYFRWSDGVADGVFSHWHEAIMHMHFDADSTFSNCHQLFMVIQDMNVKNVKNKKCCTDCKATETPLWRSGPAGPKSLCNACGIRYRKKIPTVSXCKGPKRWKKDKTYAAAAXPVXSPPQPPQTLLLLLLPPPPRAPLPEKPKLVAVVVRKIGKRVXEIEDKLDMKETYHFRXNIHLKFCDINEIKIVGKRVXAVRNLNFQGRQYFSKKPDRARDPQVLPLPSVLAIPTHMRTLSMCFSSLSQVPRSCSVYXLAHFWSEGFPNLSRTCGYNCNSKLHDSRIYAVDGGNSRKWTRRSLTTKTEGRNKSPIKLSREILDVTVSTSAALNINKMETSQYQQTQPLDFRQAIAQNKDLADLVTVIVFDIETTGFSREKDRIIEIALQDLEGGENSTFQTLVNPERSVLNSHVHGITTDMVNRPDVPRFKDLLPILVKYVKSRQKPGGCVMLVAHNARTFDVPFXRSEFLRCSVDIPSTWLFRDTMPLGREAMKSEGSSSRSISLQALREHFQIPLDGTAHRAMADVKVLSAVLQRLTCILKLPLSSLVGEAFLASETGTAKKKGSR