Information report for Lus10040404
Gene Details
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Functional Annotation
- STRING: Lus10040404 — (Linum usitatissimum)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
- GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
- Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Literature and News
Gene Resources
Homologs
- Cucumis melo: MELO3C012426P1
- Cucumis sativus: Cucsa.308400.1
- Fragaria vesca: mrna23279.1-v1.0-hybrid
- Glycine max: Glyma.02G073900.1.p, Glyma.02G073900.3.p, Glyma.02G073900.2.p
- Malus domestica: MDP0000137305
- Nicotiana tabacum: XP_016497966.1, XP_016497965.1
- Populus trichocarpa: Potri.010G223300.3, Potri.010G223300.2, Potri.010G223300.1
- Prunus mume: XP_008233317.1, XP_008233316.1
- Prunus persica: Prupe.2G212900.2.p, Prupe.2G212900.1.p
- Pyrus bretschneideri: Pbr039067.1, Pbr042397.1
- Ricinus communis: 27494.m000044
- Ziziphus jujuba: XP_015877215.1, XP_015877217.1
Sequences
CDS Sequence:
- >Lus10040404|Linum_usitatissimum|GATA|Lus10040404
ATGAGCTCGTCTGGTCAGCCGAGCGTACGACGAGGACTACTCCGTTTCTACAAGATCGTCACTACCGACTCCCTCCGTGACAGGAAGCTCATGCTTCCGAAGGTGGTCAGGAAAAGATTAATACTAATGCAGGGTAACAATGGCGGATCAGATTTCTTGTCGAACCGCACAGCAACGATATTCGTCGTCAATGAACGAGGGCTGAGCTGGGAAATGGAGCTGTGGAATGATGAAGAACAGGGCCGCCTCTGGCTGAGAAATGGATTCCATGAGTTTGCTGTCTTCTACTCTTTAGCTGACTGCCATCTTCTTCGCTTCAAGCATCTGAGTGATTTTACGTTTTCCGTTCAGATTCATGACCGTTCTGCTTCGGAGATCGACTATCCCTCCTCTCTTCCTGCTGATGATAGAGGTCAAGAACCTCAGCCCGACGATGACGACGATGACAGTGATGACGACAATGACAGCGACTTTGAAATCTCTACCGGCGTTCCTCCTCCTTCCTTCCTCTCGCCATTTCCTCAAAGAACGATGGTTGGCAACACTCAGACACCGTCGAAACTTAGCTGCGTGGACGAGCTAGACTGCGGAAGCTTCTTCGGCCAAATCGACGACCTAATCGACATCCCCTCCGACGACATCGACGCTGTCGCCGACGAAACCAAGAACTACGGTGGCTCCGATGACCTCTCTGATGCACTGTACGTTCCGGACGATGACATTGGTCAGCTGGACATGCTAACCAGTGCTGTTGAGGATTCAGGATTCCTCACCGTGAACGACAGTGTGAACAAGAACTTGTCTCGTTCAGCGATATGGTTCAGGTTCAGGACATCGAGCCCCATCTCGGTCCTCAACAGTTCAGGGGACCACCAAAAGCCAGCTTCATCTTGCAGAGAGGAAGCCAATGTGCCTCCAAGGAAACGTGGACGTCCTCGCGAGAAATGGTCGAGCCCCATCTCGGTCCTTGACAGTTCAGGGGACCAAAAGCCAACTTCATCTTGCAGCATGGAAGCCAATGTGGCTCCAAGCAAACGTGAATGCTCGAGCCTCAGCTCAGTCCTGGACAGTTCAGGGGACCAAAAGCCAGCTTCACCTTGCATAGTGGAAGCCAATGTGGCTCTGGGGAGACGTGGACGCCCTCCTTGCAAGAAATTTTGCCCCTGCTGTTATTTCCCCCGCCCTAGGTCAGAAATGCAGCGCACTAACTCGGAGCAGAAGAAGATCAAGAAGAAGAAGAAGAGGATGGAAGTGATGAATGCAGAACCAGGGCAGCAACAACAGCAGGGGGTGAGGAAATGCGTGCATTGTGAGGCGACCAAGACACCACAATGGAGGGCTGGCCCGATGGGGGCGAACACACTTTGCAATGCTTGTGGGATTATGCAGGTGAAGTTGGGGAGGCTTTTGCCCGAATACCGGCCTGCAAATAGCCCGACCTTTGTTCCATCCCTACACTCCAATGTTCACAAGATGGTCCTCCAGATGAGAACCAATACTAATGCTACTACAAATGATGGTGATCTACAAGTTAAGAATGCACACTCACCGGAGCTACTGATTCCGAATCTCAACAGCAATCTTGCCATGGATAGATGTGTGAGATAA
Protein Sequence:
- >Lus10040404|Linum_usitatissimum|GATA|Lus10040404
MSSSGQPSVRRGLLRFYKIVTTDSLRDRKLMLPKVVRKRLILMQGNNGGSDFLSNRTATIFVVNERGLSWEMELWNDEEQGRLWLRNGFHEFAVFYSLADCHLLRFKHLSDFTFSVQIHDRSASEIDYPSSLPADDRGQEPQPDDDDDDSDDDNDSDFEISTGVPPPSFLSPFPQRTMVGNTQTPSKLSCVDELDCGSFFGQIDDLIDIPSDDIDAVADETKNYGGSDDLSDALYVPDDDIGQLDMLTSAVEDSGFLTVNDSVNKNLSRSAIWFRFRTSSPISVLNSSGDHQKPASSCREEANVPPRKRGRPREKWSSPISVLDSSGDQKPTSSCSMEANVAPSKRECSSLSSVLDSSGDQKPASPCIVEANVALGRRGRPPCKKFCPCCYFPRPRSEMQRTNSEQKKIKKKKKRMEVMNAEPGQQQQQGVRKCVHCEATKTPQWRAGPMGANTLCNACGIMQVKLGRLLPEYRPANSPTFVPSLHSNVHKMVLQMRTNTNATTNDGDLQVKNAHSPELLIPNLNSNLAMDRCVR*