Information report for Lus10028166
Gene Details
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Functional Annotation
- Refseq: XP_023538549.1 — GATA transcription factor 24-like isoform X2
- Swissprot: Q9LRH6 — GAT25_ARATH; GATA transcription factor 25
- TrEMBL: A0A1Q3BG01 — A0A1Q3BG01_CEPFO; GATA domain-containing protein/tify domain-containing protein/CCT domain-containing protein
- STRING: Lus10028166 — (Linum usitatissimum)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0007623 — Biological Process — circadian rhythm
- GO:0005634 — Cellular Component — nucleus
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0005515 — Molecular Function — protein binding
- GO:0008270 — Molecular Function — zinc ion binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
Family Introduction
- GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
- GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
- Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Literature and News
Gene Resources
Homologs
- Citrullus lanatus: Cla022146
- Citrus sinensis: orange1.1g017356m, orange1.1g017348m, orange1.1g017321m
- Cucumis melo: MELO3C011078P1
- Cucumis sativus: Cucsa.160520.6, Cucsa.160520.5, Cucsa.160520.4, Cucsa.160520.3, Cucsa.160520.2, Cucsa.160520.1
- Juglans regia: WALNUT_00014897-RA
- Malus domestica: MDP0000316985
- Manihot esculenta: Manes.05G189500.1.p
- Populus trichocarpa: Potri.002G110800.1
- Prunus persica: Prupe.1G534400.1.p
- Ricinus communis: 29596.m000719
- Vitis vinifera: GSVIVT01009198001
- Ziziphus jujuba: XP_015886035.1, XP_015886036.1
Sequences
CDS Sequence:
- >Lus10028166|Linum_usitatissimum|GATA|Lus10028166
ATGATTTCCGGCCCCCAGCAGTTCACGGCAATGTACTCGCACTCTCCGTCCGTGGATATTCCTCACCAGATTGACGTCGTCCCCGGTTCCGGCGAAGACAACGATCCTTCCGGGGCACCGGATTGTATGGGCCAGCAAAGCCACATTGGATATGATGACGGTTCCGTCGCCGCAACTGGAATCATGGTCGACGACATGTCTCCTGACTCCGTATATGCTTCTGCCTGTGGTGGCCCTGGCTCGGAGTTTGGTTTCCAGGGCGGCGATATCAGCAACCAGCTTACTTTGACGTTTCGTGGCCAGGTTTATGTGTTTGACGACATCACTCCAGACAGGGTTCAGGCAGTGCTATTACTTCTAGGAGGGTGTGAAGTAAATTCAGGTCTGTATGGCATGGATGGCGCACCTCAAAGCCAAAGGGATCCGGTGATGGAATATCCAGGGCGTTCTACACAGCCTCATAGAGAAGCATCGTTAAACAGATTCAGACAGAAGAGGAAAGAACGATGTTTTGACAAAAAAGTCAGATATGGCGTTCGGCAACAGGTTGCACAAAGAATGCATCGCAAGAAAGGGCAGTTCACCTCAGCGAAGCAGCCCGATGGAACAGATGGCGGGGATGGCAGTCAGGACTCAGGACATGATGACAGTCAGCAAGAAATATACTGTACCCATTGTGGCATTAGTTCCAAATTGACTCCGATGATGCGGCGCGGTCCATCTGGTCCAAGATCTCTTTGCAACGCATGCGGCCTTTTCTATGCAAACAAGGGAGTACTAAGAGATTTGTCAAAGAAGAACCAGGATCATGGTACAGTACCAGTAGAGCAGCTCGAAGACGCAAACGACGACTGCGATGACCCAATGGACGACGACGTGGAATTGCCGCACGTGAACTCTGACATCAACGACGTCGCTGGGCTTCGTACGGAAGCAGTGGTTGGTGGCCGTAGTAGTAGTGGTGGTGCGGCCATGGCTTCCAGGAGGAGGAGCAGCGAGCTCACTCTCTCTTTTGAAGGAGAGGTTTATGTTTTTCCTGCCGTTTCTCCCGAAAAGGTACATGCTGTGCTATTGCTTTTGGGGCGACAAGATGTACCACCTCCTGTTGTACCTGGATTTGAAGTACCGTTTGATCATCAAAGTAACAGGGCCATGGGGGATTCTCCAAAACGCTCTAATCTTTCGCGTCGAATAGCATCCCTTGTCAGGTTTCGGGAGAAGAGGAAGGAGCGATGTTTCGACAAGAAAATACGATACACTGTTCGAAAAGAAGTTGCACAGAGGATGCATCGGAAGAATGGCCAATTTGCTTCATTAAAAGAAAATTCTGGCGGTTCAAGTTACGACACTGCTCAGAGTTTCCCTCAAGATGGCAATTCTGTACTGGAAACTGCGCTTAGGAGGTGTCAACATTGTGGTGTAAGTGAGAAGAATACTCCTGCAATGCGACGTGGACCAGCTGGACCAAGAACTTTATGTAATGCATGTGGCCTCATGTGGGCAAATAAGGGTACCCTCAGGGATCTCAGTAAAGGTGGAAGGAGTCTTCCTGCAGATCAAGTGGAACCTGAAACTCCAGTTGATCTGAAGCCTACTCTTGCTGAAGGAGACATGCAGGTGATTGGAGATGTTACTGGAGGGTCATCCAGCAATCCTATTAATCAAGATCAAGAGGAGGCCTTCGTCAAACATACTAATAATCCTTCAGACACATACCTGGATCCTCCTCCCAATTTCGATTAG
Protein Sequence:
- >Lus10028166|Linum_usitatissimum|GATA|Lus10028166
MISGPQQFTAMYSHSPSVDIPHQIDVVPGSGEDNDPSGAPDCMGQQSHIGYDDGSVAATGIMVDDMSPDSVYASACGGPGSEFGFQGGDISNQLTLTFRGQVYVFDDITPDRVQAVLLLLGGCEVNSGLYGMDGAPQSQRDPVMEYPGRSTQPHREASLNRFRQKRKERCFDKKVRYGVRQQVAQRMHRKKGQFTSAKQPDGTDGGDGSQDSGHDDSQQEIYCTHCGISSKLTPMMRRGPSGPRSLCNACGLFYANKGVLRDLSKKNQDHGTVPVEQLEDANDDCDDPMDDDVELPHVNSDINDVAGLRTEAVVGGRSSSGGAAMASRRRSSELTLSFEGEVYVFPAVSPEKVHAVLLLLGRQDVPPPVVPGFEVPFDHQSNRAMGDSPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKENSGGSSYDTAQSFPQDGNSVLETALRRCQHCGVSEKNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLPADQVEPETPVDLKPTLAEGDMQVIGDVTGGSSSNPINQDQEEAFVKHTNNPSDTYLDPPPNFD*