Information report for GSVIVT01024194001
Gene Details
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Functional Annotation
- Refseq: XP_002274872.1 — PREDICTED: GATA transcription factor 5
- Swissprot: Q9FH57 — GATA5_ARATH; GATA transcription factor 5
- TrEMBL: A0A438DMH6 — A0A438DMH6_VITVI; GATA transcription factor
- TrEMBL: F6I195 — F6I195_VITVI; GATA transcription factor
- STRING: VIT_03s0038g00490.t01 — (Vitis vinifera)
- GO:0030154 — Biological Process — cell differentiation
- GO:0045944 — Biological Process — positive regulation of transcription from RNA polymerase II promoter
- GO:0005634 — Cellular Component — nucleus
- GO:0005667 — Cellular Component — transcription factor complex
- GO:0000977 — Molecular Function — RNA polymerase II regulatory region sequence-specific DNA binding
- GO:0001085 — Molecular Function — RNA polymerase II transcription factor binding
- GO:0001228 — Molecular Function — transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
- GO:0003682 — Molecular Function — chromatin binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
- GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
- Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn232901
- Citrus sinensis: orange1.1g021193m
- Daucus carota: DCAR_022910
- Fragaria vesca: mrna01638.1-v1.0-hybrid
- Juglans regia: WALNUT_00003876-RA
- Malus domestica: MDP0000777336, MDP0000172464
- Manihot esculenta: Manes.04G084400.2.p, Manes.04G084400.1.p
- Nicotiana benthamiana: Niben101Scf04664g02003.1, Niben101Scf01190g04010.1
- Nicotiana tabacum: XP_016469127.1
- Prunus mume: XP_008236856.1, XP_008236855.1
- Pyrus bretschneideri: Pbr022349.1
- Sesamum indicum: XP_011088480.1
- Solanum lycopersicum: Solyc01g110310.2.1
- Solanum melongena: Sme2.5_00175.1_g00001.1
- Solanum tuberosum: PGSC0003DMP400005648
Sequences
CDS Sequence:
- >GSVIVT01024194001|Vitis_vinifera|GATA|GSVIVT01024194001
ATGAGATGGCGATGTGGGATTGGACCCAACAAAGGTAGGCTGGAGTACTTTCACTGGAGAGAGATTAAAGATAAACCATTAACTCAGAGCAAACCCCTCATCATTTTCCAGTGCTGCTGCCTCTGGAATCTCTCCCGACTTCCTCTCTTCAACCTCTGTTCATCTTTGTCAGGAATGGATCAGTGTATTGAATCAAGAGCGTTGAAAGAAAGTTTACGCAGAGAAGCGGCCATGAAGACGACCCCGCAGGTGTTGTATGATGATGTATTGTGTGGTGCCGGAGTTAATGGCGTTTCAGGCGAGGACTTCTCCGTTGACGACCTTTTTGACTTTTCTAATGGGGGGTTAGGAGTTGGAGTTGACGATGATAACTCAAATTCCAGCAGTTTCTCCGGCACCGGAGATTTTGAGTCCCTTTCGGCGGGAGGACTAGCCGTTCCTGCTGACGATTTGGAGCACCTTGAATGGTTATCTCACTTTGTAGACGATTCTTCAGCGTCGGAGCTCTCTCTTCTATGCCCCGCCGTTACCGGAAACTCTCCGTCAAAGCGGTGCGAAGAAGAGCCTAGGCCGGCGTTGTTGAGAACTCCGCTATTTCCGACGCCGCTTCCGGCAAAGCCCAGAAGCAAACGGCACAGAAGCAGCGGTCGTGCCTGGGCTTTTGGGTCTCATTCACCATCTTCGTCTCCTTCCTCTTCGTCGTCCTCGTCTTCAACGTCTTGCTTGATATTCGCCAACACCGTTCACAACATGGAGTCGTTTTACAGTCTCGAAAAGCCGCCGGCGAAGAAGCCCAAAAAGTCACCGTCGGCGGACTCTCAGCCGCAGCGGCGCTGCAGCCATTGCCTGGTTCAGAAGACCCCACAGTGGCGAACCGGGCCACTCGGCCCAAAAACCCTCTGCAACGCTTGTGGGGTTCGTTTCAAATCCGGCCGGCTCTTCCCGGAGTACAGACCAGCCTGCAGTCCAACTTTCTCCGTCGAAATCCACTCCAACAGCCACCGGAAAGTCCTAGAAATTCGGCGAAAGAAGGAGACAGCTGAACCTGTGTCCGGCTAA
Protein Sequence:
- >GSVIVT01024194001|Vitis_vinifera|GATA|GSVIVT01024194001
MRWRCGIGPNKGRLEYFHWREIKDKPLTQSKPLIIFQCCCLWNLSRLPLFNLCSSLSGMDQCIESRALKESLRREAAMKTTPQVLYDDVLCGAGVNGVSGEDFSVDDLFDFSNGGLGVGVDDDNSNSSSFSGTGDFESLSAGGLAVPADDLEHLEWLSHFVDDSSASELSLLCPAVTGNSPSKRCEEEPRPALLRTPLFPTPLPAKPRSKRHRSSGRAWAFGSHSPSSSPSSSSSSSSTSCLIFANTVHNMESFYSLEKPPAKKPKKSPSADSQPQRRCSHCLVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSVEIHSNSHRKVLEIRRKKETAEPVSG*