Information report for estExt_fgenesh1_pg.C_130010
Gene Details
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Functional Annotation
- Refseq: XP_005645537.1 — hypothetical protein COCSUDRAFT_48229
- TrEMBL: I0YRH4 — I0YRH4_COCSC; Uncharacterized protein
- STRING: XP_005645537.1 — (Coccomyxa subellipsoidea)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0007623 — Biological Process — circadian rhythm
- GO:0009416 — Biological Process — response to light stimulus
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
- GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
- Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >estExt_fgenesh1_pg.C_130010|Coccomyxa_subellipsoidea_C-169|GATA|estExt_fgenesh1_pg.C_130010
ATGGAGGTGTTGTTTGAGCCCAAGTGCGCCATCTGCCCCGCCGAGCCGGACGACCTGGCCTCGGGCGGCTGCAGCGACGGGTGCGAGCTGCTAACTGGCGAGGTTTGCGAGGCCAGCTGGTGGGATGGGTTACTCAATGGGAGCGAGTCGGAGGGCCCGGAGGCCGGATTCAATGGGAGCCAGCATGAGTTGTCTGCCATGGAGTGGCAAACCATTGGTGGTCTGGAAGCGGACTGCGACCCCAACAACATCCCCTGCATGGCCGACGAGCTGGAGCACTTCTCAGAGCAGCTCCCATTCTTACAACCCTGCGAGCCAGAGATCCTGCCATCCCCGGTGCTGCAGAACTGCCTGAGCAGCTCCAACGTGTCAGCCCTCTCCTGCGCCACCAAGGCATCCGTGCCCGCTGTCTTCGCGGCGCAGCCACCAGCCATGGTGGAGGCAGCTGAAGAAGAGGCGGCAGAGGCTGATGCAGCCGCAGCTGCCTCAGCTTCGCCGACGTGCAGAGGCGTTCTCATGGCGGTTGCCTTGAACCAACGGGAGCCCAAAGGGGAGGAGGAGGAGGGGGGACCGCTGTCACCGGCGCTGCGGGCGCTGCGCATGAAGCTTCCGGACTCGCTAAAAAATGCGGAGGCCATCCGCGATGGCTGCAGCCCGCCCTTCGCCGGCGCCTGGCGCGGCTGTGCCAAGAGCTCCTGGTGCAACCGGGAGAACCGGCACCGTGGCGTTTGCAACACACGGGCCGAGGTTCCCGGCCTGGCAGCGTACGGAGCCGAGCAGCTGGCGGCAGAGGGCGTGCGCGGCGCAGACTTCCCGGGGCAGTGGCAGCTGCCGGGCACCTTCATCAAGGAGGAGCAGCCACGCCGTGACGACCTGGACGACAGCGAACAAGCATCGGCCACGGAGGTGCTACTTGAGCGTGCATGCGATCCGGACGCGCAGTGCCTGGACAGTGGCATTCCCCGCTGCTGCCAGGTCAGCATCGAGCCGCAGCCCAACTGCCACTCACGCACGCGCCTGCGCCTGATGGTCAAGCGGCAGCAGCAAGCGCCCGCGGAGGAGGGTTCGCCCCCGGACGGGCCCCCTACCCCCGAGCTGCAGGCCCCCGCATTCGCGTCCCAGGAGTCGTCCGACTCTGCCAACACCCAACGGGAGACGGATGCGAGCAGCGAGGACACTGGCGGGGCGGACGCTGACGAGGTACGCTGCTGCGCCCACATCGACCGCAGTCCCCCGCCAAAAGCCACACTGGCCGCCGCCAAGACCTCAGAGCGGTTGCGTCGCGTGTCACCCTCTACCCCCGAGGCCACCGCGCACCGCCCCAGCTCCAAGCCCACCCCGGAGCGGCTGGAGCGCAGCCTGCAGGTGTCTGCGGCAGCAGGCAGGCGCGAGGCGGTGGTATCGCCCTTCGCGGCCTCGCTACCTCTGTCGCATGCGACCGGCCGCGGCTCTTCCCCGGGCGGCTTTGTGCAGACTTCAAGCGGTCGCATCGCGCGGCCTACGCCCAAAACCGCTGCCTCGCGGGCCGCCTCCGATGACCTCTCTGAACTCTCCCACACCGAAGGGCACAGAGCGCCGACAAAGCGCAAGAGCGGGCGGCCGGCCAAGGGCGGCGAGAAAAGCAAGCGGCGGCGCATGGTCGGCGGCATCCTTAAGACTGTCGGCCACGCAGCGCCGGGCCAGCAGTGCACCCAGTGTGGCACTCAGGTGACCCCTGTGTGGCGCGCCGGTCCCTATGGCCCCAAGACCCTGTGCAACGCCTGCGGCGTCCGCTACATGAAGCAGGTTAAGAAAAAATGA
Protein Sequence:
- >estExt_fgenesh1_pg.C_130010|Coccomyxa_subellipsoidea_C-169|GATA|estExt_fgenesh1_pg.C_130010
MEVLFEPKCAICPAEPDDLASGGCSDGCELLTGEVCEASWWDGLLNGSESEGPEAGFNGSQHELSAMEWQTIGGLEADCDPNNIPCMADELEHFSEQLPFLQPCEPEILPSPVLQNCLSSSNVSALSCATKASVPAVFAAQPPAMVEAAEEEAAEADAAAAASASPTCRGVLMAVALNQREPKGEEEEGGPLSPALRALRMKLPDSLKNAEAIRDGCSPPFAGAWRGCAKSSWCNRENRHRGVCNTRAEVPGLAAYGAEQLAAEGVRGADFPGQWQLPGTFIKEEQPRRDDLDDSEQASATEVLLERACDPDAQCLDSGIPRCCQVSIEPQPNCHSRTRLRLMVKRQQQAPAEEGSPPDGPPTPELQAPAFASQESSDSANTQRETDASSEDTGGADADEVRCCAHIDRSPPPKATLAAAKTSERLRRVSPSTPEATAHRPSSKPTPERLERSLQVSAAAGRREAVVSPFAASLPLSHATGRGSSPGGFVQTSSGRIARPTPKTAASRAASDDLSELSHTEGHRAPTKRKSGRPAKGGEKSKRRRMVGGILKTVGHAAPGQQCTQCGTQVTPVWRAGPYGPKTLCNACGVRYMKQVKKK*