Information report for DCAR_018802
Gene Details
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Functional Annotation
- Refseq: XP_017248640.1 — PREDICTED: GATA transcription factor 11-like
- TrEMBL: A0A162A570 — A0A162A570_DAUCS; Uncharacterized protein
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
- GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
- Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Literature and News
Gene Resources
Homologs
- Brassica oleracea: XP_013604894.1
- Brassica rapa: XP_009118398.1
- Hordeum vulgare: MLOC_71376.4, MLOC_71376.3, MLOC_71376.2, MLOC_71376.1
- Nicotiana benthamiana: Niben101Scf04130g00007.1, Niben101Scf03614g00004.1
- Nicotiana tabacum: XP_016465977.1, XP_016465978.1, XP_016514726.1, XP_016514725.1
- Petunia inflata: Peinf101Scf02234g00030.1
- Populus trichocarpa: Potri.004G211800.1
- Triticum aestivum: Traes_5BS_938D6B791.1, Traes_5BL_852C30796.1
Sequences
CDS Sequence:
- >DCAR_018802|Daucus_carota|GATA|DCAR_018802
ATGTCCAAGCTTCCGAGTGATAGAACATCAGTGGTGACTTTACTTAGGAATCCGATCGACCGCTTTTTCAGCAGTTATGAATTTTCGATAGAGGTTGCTGCTAGGTATATGATATATCCTAACATATCATCTGCCACTAAAATGTCTAAACTCGCAAGTAAAAAGTCAAAAGCTGTAACCACAATGGATATCTGGCCATGGAAATATTTAGTTCCTTGGATGAGAGATGATCTATTTGCTCGGAAAGAAGCCAGAAAGCATAAAAGCTTATCTTATTCCCAAATCAGCGACCTATACAATGCAGAGGATATTGTTATGCCATTGATCGAATACATGCGTCACCCTATAGCTCTGGACATCATTCACAATGGAGCTACATTCCAGGTTGCAGGGCTGACAAATAACTCTAATTTAAGGGAAGCACACGAACTGCGTCAATGTGTGATAAAGTATCAGAGGCTTGGTGACCATGTGCTTGAAGTAGCAAAGAAGAGACTGGACGATATGCTCTATGTTGGCCTAACGGAGAGCCACAATGAATCTGCCTTATTGTTTGCAAATTTGGTTGGTGCACAAGTGATTTCCCAGTTGGTGGAATTGAACTTAAGCACAGAGCTTGCGTCTAATAATGAACCTGCGCAAAATGTGTCAACAGTACCAGATTCAAAGGTTTACACTTCATTACATCAGATGACTGTGGAGGGACTTCACGAAGCTTTTAAGAAATGTGTTCCTGAATTACGTAGAGTCCAAACAAATCGACGGAATACTTCTTTTCATAAAATCCCTTCATTAAACTTTAGGAAAGAGCTCACTGCACGTATATTATTTTGGTTTGAGTTTTGGAGTATGGGCGAGGCAGGGGGATATTGGGATGGCTTTGTTAATGGTGATGATTCGTTTCATAACGTTATTAATATGCTGGACTTCCCTTTGGAAAGTGTGGAAGAGGATAAGTGTGTCGCTGAGGAGAATTGGGATGCTCAGTTTCCAAGCCTAGGACCATTCTCATCAGAAATTGTGCAGGAATTTACCCCAGTTTTCAGATCTGATTTCACTGAAGACGTGCCTTATAGCTTTATTGAGAATGATGCAGCCTCTGATAGAAAACTGCTACCAGTTACTGAGTTCTCCAGCACAAATTTTTCTCTTGATTCTTTTCATCCCAGAAACCTAAGCTTGTTACAAACTCCAAGCCAGAACTCGGTACTTGAAAGTAGCAGCTCCTGCTCAGCTGGTAAAAACTTGTCAACTAGCTGTGAACTCCTTGTCCCAGTCAGAGCTCGGACTAAGATTCCGCGGAGCTTGACCTTCACTAGATGGCATTTGCTCTCTCCGTTAACTCCACCTAGAAAGATATTGCACTCAGAAGGCAAAGAGAAGAAGAATATGCAACCATCACAGCATTCAAATGAATTCGACATGAAGGAAGACTCTTATCCTCAGCATATGCCATATAAAAGATGTACTCATTGTCAAGCTGAAAAAACACCGCAATGGAGAGCAGGACCCATGGGGCCTAATACTCTTTGCAATGCATGTGGAGTTTGTTATCGTAAACGGAAACACCTTCCGACATATCGTCTGATTTCAAGTCATAGTCTAAACACAGAGAAGTGTTCATTCACTCGAGGAAAAGAGAAGAAAATAAATTTGTCTAGTGAGATTAAGGAAGATTTAACAAATCAGCTTCCAGAAGACTGCGAAATTGCAGAAGATTTAACTTATCAGCTTCCATGCAAACGATGTACTCTGTGTAATGTTACAAAAACACCCCAGCAGAGGGAAGGCCCAGTGTGCAATGCACGTGGAGTTCGTTCTCAGTCGGGCCGCCTCTTACGGGAGAGTCTTCCGAGTCCTGACCCTGAGGAAATAAACACTAAAAAGAGAGAGAAGAAAAAGGAACTGTCCGGAGTTCCAAATGACTCCGGGGCCATGGGGTTTGCAACTCATCAGCCTATGCAAGTCAGAAGATGTACTCATTGCCAAGTCTCAAAAACACCACAATGGAGGGAAGGACCAAATGGGCCGAGAACCCTTTGCAATGCATGTGGGGTTCGCTACCGGTCTGGTCGGCTTGTTCCTGAATATCGTCCAGCAGCCAGTCCTACTTTCACTCCATATTTGCACTCAAACAAGCACAGGAAGGTCATAGAAATGAGGAAAAAAGCTAGTTCTGAATTTAGTGTCTGA
Protein Sequence:
- >DCAR_018802|Daucus_carota|GATA|DCAR_018802
MSKLPSDRTSVVTLLRNPIDRFFSSYEFSIEVAARYMIYPNISSATKMSKLASKKSKAVTTMDIWPWKYLVPWMRDDLFARKEARKHKSLSYSQISDLYNAEDIVMPLIEYMRHPIALDIIHNGATFQVAGLTNNSNLREAHELRQCVIKYQRLGDHVLEVAKKRLDDMLYVGLTESHNESALLFANLVGAQVISQLVELNLSTELASNNEPAQNVSTVPDSKVYTSLHQMTVEGLHEAFKKCVPELRRVQTNRRNTSFHKIPSLNFRKELTARILFWFEFWSMGEAGGYWDGFVNGDDSFHNVINMLDFPLESVEEDKCVAEENWDAQFPSLGPFSSEIVQEFTPVFRSDFTEDVPYSFIENDAASDRKLLPVTEFSSTNFSLDSFHPRNLSLLQTPSQNSVLESSSSCSAGKNLSTSCELLVPVRARTKIPRSLTFTRWHLLSPLTPPRKILHSEGKEKKNMQPSQHSNEFDMKEDSYPQHMPYKRCTHCQAEKTPQWRAGPMGPNTLCNACGVCYRKRKHLPTYRLISSHSLNTEKCSFTRGKEKKINLSSEIKEDLTNQLPEDCEIAEDLTYQLPCKRCTLCNVTKTPQQREGPVCNARGVRSQSGRLLRESLPSPDPEEINTKKREKKKELSGVPNDSGAMGFATHQPMQVRRCTHCQVSKTPQWREGPNGPRTLCNACGVRYRSGRLVPEYRPAASPTFTPYLHSNKHRKVIEMRKKASSEFSV*