Information report for Ciclev10009004m
Gene Details
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Functional Annotation
- Refseq: XP_006451458.1 — putative GATA transcription factor 22
- Refseq: XP_006475428.1 — putative GATA transcription factor 22
- Swissprot: Q9SZI6 — GAT22_ARATH; Putative GATA transcription factor 22
- TrEMBL: A0A2H5PUY5 — A0A2H5PUY5_CITUN; Uncharacterized protein
- TrEMBL: V4TVW6 — V4TVW6_9ROSI; Uncharacterized protein
- STRING: XP_006475428.1 — (Citrus sinensis)
- STRING: XP_006451458.1 — (Citrus clementina)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0007623 — Biological Process — circadian rhythm
- GO:0009416 — Biological Process — response to light stimulus
- GO:0009735 — Biological Process — response to cytokinin
- GO:0009740 — Biological Process — gibberellic acid mediated signaling pathway
- GO:0009910 — Biological Process — negative regulation of flower development
- GO:0010187 — Biological Process — negative regulation of seed germination
- GO:0010380 — Biological Process — regulation of chlorophyll biosynthetic process
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
Family Introduction
- GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
- GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
- Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g021859m, orange1.1g027800m
- Fragaria vesca: mrna12624.1-v1.0-hybrid
- Glycine max: Glyma.15G169300.1.p
- Gossypium arboreum: Cotton_A_33698_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D06G0725
- Juglans regia: WALNUT_00000806-RA
- Lotus japonicus: Lj4g3v2140320.1
- Malus domestica: MDP0000190038
- Manihot esculenta: Manes.16G102600.1.p, Manes.03G033200.1.p
- Medicago truncatula: Medtr4g126350.1
- Nicotiana benthamiana: Niben101Scf06045g00014.1, Niben101Scf04312g03008.1, Niben101Scf05620g00004.1
- Ricinus communis: 29912.m005322
- Vitis vinifera: GSVIVT01015204001
- Ziziphus jujuba: XP_015889150.1
Sequences
CDS Sequence:
- >Ciclev10009004m|Citrus_clementina|GATA|Ciclev10009004m
ATGACTCCAAATTATCACTTATCACCTGTCACTCCTTTTCCTCTAGAGCTTAAAGAAGATCAACTCTTGAATTTGAATCAACCTCCATCTTCTTCTTCTCCTGCCTCATGTCATAACTTCTTTGAACCAGTTCAACGAGAAGGAGGATTTTATTATAGGGAATCGGTTTTGCTACGACACCCAAAAGAGGTTAGGATATTATACTCACAAGCTGCTGGATCATGCGATCATCCAGGACCAGCAGTGATGGATGAGAGTGGCAGTGAGAGTACTGGCCTCAAGTTATCCATGAGCTCGGAAAAAGAAGAGAGAAATGATCAAAATCAAAGTGAGAATAGCTCTTCAGTTAAGTGGATGTCTTCAAAGATGAGGTTGATGAAGAAGATGATGTATTCATCACCTGACGCTGCTGCTATGCAAAAGCTTGAAGATCATCAGAAGCAACCACCATCATCATCTTTAGAACCTGACAACGGTAACAACAATAATAACACAAATACAATTAGGGTTTGTGCTGATTGTAACACAACGAAGACCCCTCTTTGGAGGAGTGGACCTAGAGGTCCCAAGTCACTATGCAACGCTTGTGGGATTCGGCAAAGGAAGGCAAGAAGGGCCATGGCAGCAGCTGCGGCAAATGGGACAGCAGTGCAACTTGCAGCTGATGATACATCATCTAATAAGAAGAAGAGTAAGACACCAAGACCAAGTAACAACAATAGCTGCCTTCCATTCAAGAAAAGGTGCAAATACAATTCCAATAGCCCATCACGTGGGAAAAAGAAGCTTTGCAGTTTTGAAGACTTAACCTTAAATTTGAGCAAGAACAATAGTTCAGCTTTACAAAGAGTTTTCCCTCAAGAAGAAAAGGAAGCTGCGATCCTTCTAATGGCTCTATCATATGGGCTTGTTCATGGCTAG
Protein Sequence:
- >Ciclev10009004m|Citrus_clementina|GATA|Ciclev10009004m
MTPNYHLSPVTPFPLELKEDQLLNLNQPPSSSSPASCHNFFEPVQREGGFYYRESVLLRHPKEVRILYSQAAGSCDHPGPAVMDESGSESTGLKLSMSSEKEERNDQNQSENSSSVKWMSSKMRLMKKMMYSSPDAAAMQKLEDHQKQPPSSSLEPDNGNNNNNTNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAANGTAVQLAADDTSSNKKKSKTPRPSNNNSCLPFKKRCKYNSNSPSRGKKKLCSFEDLTLNLSKNNSSALQRVFPQEEKEAAILLMALSYGLVHG*