Information report for AHYPO_002339-RA
Gene Details
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Functional Annotation
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
- GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
- Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Literature and News
Gene Resources
Homologs
- Glycine max: Glyma.03G118100.1.p, Glyma.07G016800.1.p
- Gossypium arboreum: Cotton_A_22262_BGI-A2_v1.0, Cotton_A_20475_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D05G0481, Gh_D06G0967, Gh_A06G0834, Gh_A05G0366, Gh_Sca082239G01
- Lactuca sativa: Lsa001100
- Nicotiana benthamiana: Niben101Scf03728g00001.1, Niben101Scf01611g01003.1
- Nicotiana tabacum: XP_016491364.1, XP_016514226.1
- Populus trichocarpa: Potri.018G044900.2
Sequences
CDS Sequence:
- >AHYPO_002339-RA|Amaranthus_hypochondriacus|GATA|AHYPO_002339-RA
ATGGACGATTCCTTCACAACCAAATGCTTGGCCATTCCATCCAATCTTGAAAAGGGGCCTAACAGATGCAGCCCAACCCCATCTATATTCATCAAATTCCCATCACTTCCCAATAATGAGTTTAACCAGTGCGATATGACCCCATTGGCATCCACCCAATCCACTTCTAATACCGGGTCTAAACAGGGCAACACGACCCTACCGACACTCAATCAACTTATTCTTAGTACCGGGTCTAACCAGGGTGACACGACTCCATTGGCATCCATCCAATCCACTCCTAATACCGAGTCTAAAAAAGGCGGCACGTCCCAATCGACATCCATCCAATTTACTCCTAATATCGGTTGTATGCAGGGCGACACGAACCCATCAACATTCACTCAATCCACTCCTAACACCAGGTTTAACCAGGGCGATACGACCCCATTGGCATCCACCCAATTCACTCCTAATATTGGGTCTAAACAGGGTGACAGGATCCCACCATCATCCACCCAATCCACTCGTAATACCAGGTCTAAGCAGGGCGACACAACCCCACCAACATTCACTCAATTCACTCCTAATTCCAAGTCTAACCAGGGCGACACGACCCCATTGGCATCCACCCAATTCACTCCTAATACCAGGTCTAAGCAGAGCAACACAACCCCACCGACATTCACTCAATTCACTCCTAATTCCAGGTCTAACCAGGGCGACACGACCCCATTGACATCCATCCAATTCACTCCTAATATCGGGTCTAAACAAGACGACATGACCCCACCAACATCCACCGAATCCCCTTCTAATATCGAGTCTAAGCAGGGTGACACGACCCCACCGACATTCACTCAATCAACTCCTAAAATCGGGTCTAACCAAGGCAAAACGATCTCTTTGTCATCCACCCAATTCACTCCTCATACTAGCTCTAAGCAGGGCGGCACGGCCTCAACGACATCCACTCAAACGACTCCTAATACTGGATCTAAGCAGGAAGACACAACCGCACTGACATTCACTCAATCCACTCCTAATACTGAGTCTAACCAGAGTGACACGACCTCATTGGAATTCACCCAACTAACTTCTGGTAGCGCCCAGAGAAAACGCTCTCACTATCCTGCATCTTTAGAAAGTGAACCAAAGTTGAAGAAAAGATCCTCCAAGAAAAGGCCAGAAGGTGATCTAAAGTGCATGCATTGTGGGACAGTTAAGACGCCGCAATGGAGGAGTGGGCCACAGGGTCCAAAGTCATTGTGCAATGCATGTGGGGTTCGGTTTAAATCGGATCGTTTATATCCCGAATATAGGCCCGCTGCGAGCCCAACATTTAAGCTAAATGAGCATTCTAATACACACCGAAAAGTACTAGACATCAGAAGACAAAGGGGACTTGACTTACCTCCTCCAATTCCACAACAACCACAATCGATTACTCATGTTCATCAACAACAACAACTGTTTAATGTTCCTCAACAACAACAATTGATTAGTAATGATCAACGACAACAATTGCAATTGACTAGTAATTGTCAACCACAACAACTGATTAGTGATTTTCAAAACTCTTTGAGCCCAACATTTAAGCCATATGAGCATTCTAATACACACCGAAAAGTTATAAACACCCAAAGACAAAGGCAACAAGACTCACTTCCTCCAATTCCACAACAAGCACAATTGATTACTCATGTTCATCAACAACAACAACTGTTTAGTGTTCCTCAACAACAACAACAATTGATTAGTGATGATCAACAACAACTATTGCAATTGATTAGTTATCTTCAACAACAACAATTGATTAGTGATTTTCAAAACTATGCGAGTCTAAGATTTAAGCCAGATGAGCATTCTAATACACACCAGAACGTACTAGATATCCAAAGACAAAGTCAACAAGACTCACTTCCTCCAATTCCACAACAGCCACAATCGATTACTCATTGTTGCTCAACAACAACAACAACAATTAATTAG
Protein Sequence:
- >AHYPO_002339-RA|Amaranthus_hypochondriacus|GATA|AHYPO_002339-RA
MDDSFTTKCLAIPSNLEKGPNRCSPTPSIFIKFPSLPNNEFNQCDMTPLASTQSTSNTGSKQGNTTLPTLNQLILSTGSNQGDTTPLASIQSTPNTESKKGGTSQSTSIQFTPNIGCMQGDTNPSTFTQSTPNTRFNQGDTTPLASTQFTPNIGSKQGDRIPPSSTQSTRNTRSKQGDTTPPTFTQFTPNSKSNQGDTTPLASTQFTPNTRSKQSNTTPPTFTQFTPNSRSNQGDTTPLTSIQFTPNIGSKQDDMTPPTSTESPSNIESKQGDTTPPTFTQSTPKIGSNQGKTISLSSTQFTPHTSSKQGGTASTTSTQTTPNTGSKQEDTTALTFTQSTPNTESNQSDTTSLEFTQLTSGSAQRKRSHYPASLESEPKLKKRSSKKRPEGDLKCMHCGTVKTPQWRSGPQGPKSLCNACGVRFKSDRLYPEYRPAASPTFKLNEHSNTHRKVLDIRRQRGLDLPPPIPQQPQSITHVHQQQQLFNVPQQQQLISNDQRQQLQLTSNCQPQQLISDFQNSLSPTFKPYEHSNTHRKVINTQRQRQQDSLPPIPQQAQLITHVHQQQQLFSVPQQQQQLISDDQQQLLQLISYLQQQQLISDFQNYASLRFKPDEHSNTHQNVLDIQRQSQQDSLPPIPQQPQSITHCCSTTTTTIN*