Gene Details:

  • Gene ID: Achn029831
  • Gene Family: GATA Family
  • Description: GATA Family protein
  • Species: Actinidia chinensis
  • Source: GATA family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_028061947.1  — GATA transcription factor 25-like isoform X1
  • Swissprot:  Q9LRH6  — GAT25_ARATH; GATA transcription factor 25
  • TrEMBL:  A0A2R6QY91  — A0A2R6QY91_ACTCH; GATA transcription factor
  • STRING:  VIT_18s0001g07720.t01  — (Vitis vinifera)

Gene Ontology:

  • GO:0006355  — Biological Process — regulation of transcription, DNA-templated
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding
  • GO:0005515  — Molecular Function — protein binding
  • GO:0008270  — Molecular Function — zinc ion binding
  • GO:0043565  — Molecular Function — sequence-specific DNA binding

Family Introduction:

  • GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
  • GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
  • Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.

Literature:

Sequences:

CDS Sequence:
  • >Achn029831|Actinidia_chinensis|GATA|Achn029831
    ATGTACGGTCACACTCAGTCTATGAACGCGTCCGATCGTTTTGCCGCCGCCGAGGATGACTCGTCAGCCGGAGGCGACGACAGCGTTGGGATCGACGGTGTCGAGGTGGTGCCACCGGACGCCGTGTATGGAGACGGTGGCGGGCAGGAGGCGCCGCTGCAGCGGAGCGACTGCTCGAACCAGCTCACGCTCTCGTTCCGCGGCCAGGTTTTTGTGTTCGACGATGTGACGACGGACAAGGACTTGGACTATCCGTTAAGATGTAGTCAGCCGCAGAGAGCTGCCTCTTTAAATAGGTTCCGGCAGAAGAGAAAAGAGCGATGCTTCGATAAGAAAATTAGATACAATGTTCGCCAAGAAGTTGCACTTAGAATGCAACGTAATAAAGGCCAGTTCACTTCTTCCAAGAAGTCTGAGGGGGCTGCTAGGTGGAGTACTGCGGAGGATTCAGCACAAGATGATACCCCACCAGAAACTTTATGCACTCATTGTGGCATTAGTTCAAAATCCACTCCAATGATGCGCCGAGGACCAGGTGGGCCAAGGACTCTTTGCAATGCATGCGGGCTGTTCTGGGCAAACAAGAGTGAAGGCGTAGAATATAATTCCGACTACGGAACCCCCATCGGCACACATTGA
Protein Sequence:
  • >Achn029831|Actinidia_chinensis|GATA|Achn029831
    MYGHTQSMNASDRFAAAEDDSSAGGDDSVGIDGVEVVPPDAVYGDGGGQEAPLQRSDCSNQLTLSFRGQVFVFDDVTTDKDLDYPLRCSQPQRAASLNRFRQKRKERCFDKKIRYNVRQEVALRMQRNKGQFTSSKKSEGAARWSTAEDSAQDDTPPETLCTHCGISSKSTPMMRRGPGGPRTLCNACGLFWANKSEGVEYNSDYGTPIGTH*