Information report for 866473
Gene Details
Functional Annotation
- Refseq: XP_002876050.1 — GATA transcription factor 18
- Swissprot: Q8LC79 — GAT18_ARATH; GATA transcription factor 18
- TrEMBL: D7LTK2 — D7LTK2_ARALL; Predicted protein
- STRING: Al_scaffold_0005_1952 — (Arabidopsis lyrata)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0009793 — Biological Process — embryo development ending in seed dormancy
- GO:0009909 — Biological Process — regulation of flower development
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
- GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
- Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT3G50870.1, AT3G50870
- Brassica napus: GSBRNA2T00109396001, GSBRNA2T00151338001, GSBRNA2T00041707001, GSBRNA2T00129221001
- Brassica oleracea: XP_013603273.1, XP_013596593.1
- Brassica rapa: XP_009115764.1, XP_009136565.1
- Raphanus raphanistrum: RrC9192_p1, RrC3451_p1, RrC1181_p3
Sequences
CDS Sequence:
- >866473|Arabidopsis_lyrata|GATA|866473
ATGATGCAGACTCCGTACACAACTTCAACGCAGGGGCAATATTGTCATTCTTGTGGAATGTTCCACCACCATAGCCAAAGCTGCTGCTACAATAACAACAACAACTCCAACGCCGGTTCTTACTCGATGGTCTTCTCCATGCAAAACGGCGGCGTTTACGAGCAGAACGGCGAGGACTATCATCACTCTTCCTCCGTCGTTGACTGTACTCTGTCTCTTGGAACTCCTTCTACGAGGCTTTGTGAAGAAGACGAGAAACGTAGACGCTCTACTTCCTCTGGTGCTTCTTCTTGCATCTCCAACTTCTGGGACTTGCTTCACACCAAAAACAACTCAAAACCGACACCGTACAATAACGTTCCTTCTTTCTCCACTAACAAGCCAACTCGCGCTTGTTCCGCGGGTGGTGGTGGAGGAGGAGGCGGTGGCGGAGGTGATTCTCTTCTCGCCAGACGCTGTGCCAACTGTGACACTACTTCTACTCCACTATGGAGGAATGGTCCTAGAGGCCCCAAGTCCCTATGCAATGCATGCGGCATTCGTTTCAAGAAGGAAGAGAGAAGAACCACGGCGGCTTCAGGAAACACCGTCGTCGGAGCTGCACCAGTTCAAACCGACCAGTACGGACATCACAACTCCGGCTACAATAATTACCATGCTGCCACTGGTAACAACAATAATAATGGTACTCCGTGGGCTCATCATCACTCGACGCAGAGGGTTCCGTGTAATTATCCGGCTAACGAGATCAGGTTCATGGATGATTACGGCAGTGGAGTAGCAAACAACGGTGAATCCGACGGTGCTCACGGCGGTGTTCCGTTCCTTTCTTGGAGGCTTAATGTGGCGGATAGGGCAAGTCTTGTCCATGACTTTACCAGATGA ATGGCAGGGTGGTCGATGATAGCTGGTGGGTCTACTTTAGATTGCGCCAAAACCCCAAAGAAGCTCGAGTCAACTGGGTTAGTGGTCGATCTTCAATCTGTTTTGGAATTCAAACCCAATGAGCTCCCAAATCCCTCCAGCGAAGGCTTAATCGGTAAGCTTCGATGGTGGTTCGATCAATGTCTTGGCGTATTTTTGAAAGAGATCTGCGCAAAAGACACTTTTCGGCCTCTCCCTCCAATGCTTGGAGATGGGCAGTGTGTGGATTTGTTTAAGCTCTTTTCGGTAGTGAGAGAGAAAGGTGGATGCAATGCCGTATCAGAAAAAAAGTTGTGGGATTCGGTGGCTGAAGAGTCCGGATTGGGCTTGAGTTTCACTGCTGCTGTGAAGTTGGTTTACATTAAGTATTTAGATACACTAGAGAGATGGCTAGGTAGAGTTGCTCTTAAGGATCCCAAAAGCAGTTTGAGCAGTAGTGGCTCTGATTTGGATGAGTATCTGATGGAGCTGCAGGCTGGGTTTAAAAGGTTTATGTCGGAGATTGCCGATGGAAAGGCGAATGATGGTGGGTTGTATCCACATTTGCCTAGTGACTTGAAGCTTGAGGATGTTGATGAGTTGAAGAGGGTGGTTGTAGATTCCGATGGGTGCCGAAACTGTGATGTTGGTGGGAAGAATTTGAATTCGGATTTTGGCAAGAAAAATGGGGATGTCGGAAAATTATGTGTTGGTGATGTGGAATGCTTGGAGGGAGAGACTGGTAAGAGCAAGAAATGTGTGGATGGTAATGAGGGGTTTCCTTGTTCGGATATTAAGAAGCTGCGCGGTGTTCATGATATAAAGAGTGTGGTGGATTTGGATGGATGGAAGAGCTGTGATGATGATGATGGTGGTGATGAAGATTTAATGATTTTGGATCCTGAGACGATTGACAAAGAGAATTTTGGTAACAAGAGGAAGCGGGAGTCTCTGTGGGGGATGCTGGATTGGGTTACAATGGTTGCAAAAGATCCCTGTGACCCTGCCATCGGTTTATTACCAGATAAGTCAAAGTGGAAGTCCTATTCGGATACGGAGATATGGAAGCAGGTTTTGATGGCTCGAGAGGCTATCTTTTCCAAAAGAAATATCGATTCGGGTGGTGAGCAGTCTTATTTGCAGAAAATCCAGAGGATGCATCCAAGCATGTATGATGATCAACTTGGCTCAGGTTACAATCTTAGGGAGAGACTAAGGTGTGGGAAGAAGCTTCTCTATGGGAAAATGGCATCTCATGGAGGGGCCAATGCAGAGTCATCTGACTTGGACAGAAGTCCAAGTCCTGGCTCGGCAGGGTTGGAAGATCACTTTGATAAACAGTTGGGAGCTACTGAGTCCTCTATGCCAATTAAGGTTGTTCCTCTGGGGTCAAATTTTCAAGTTGAAGTACCAGCATGGACTGGTGAGACATCTGAAAGTGAGTCCAAGTGGTTGGGTGTGAGGCTTTGGCCACTAGAAAAATCAGAGCACAGATTTCTTATTGAAAGGGATCCTATCGGAAAAGGAAGACAAGATTCCTGTGGCTGCCAAATGCCTGGATCTACTGAATGTGTTAGATTTCATGTTGCTGAGAAAAAGTTGAGATTAAAGATGGAATTGGGTTCAGCTTTCTATCAATGGAGATTTGATAAAATGGGTGAAGATGTTGCTCTTTATTGGACAAAAGAAGACCAGAAGAAGTTCAAGGCTATAGTAAGCTCAAATCCTCCATCTATTGAGATTAGCTTTTGGAATAAGATTTTTAAGAGTTTTCCTACCAAGAGCAGAGAAGATTTGGTGAGCTACTACTTCAATGTCTTTGTTTTGCGTCGTAGAGGATACCAGAACCGGTTTACTCCAACTTACATTGACAGTGACAATGATGAATTCGAGTCAATGTTAGTAGCCAACGGATTTGGGCATGAAACGCATGACTCACCAAATAACAACTTGTTACATGAGAACAAACAGCATGAAAGTAAGAGATAG
Protein Sequence:
- >866473|Arabidopsis_lyrata|GATA|866473
MMQTPYTTSTQGQYCHSCGMFHHHSQSCCYNNNNNSNAGSYSMVFSMQNGGVYEQNGEDYHHSSSVVDCTLSLGTPSTRLCEEDEKRRRSTSSGASSCISNFWDLLHTKNNSKPTPYNNVPSFSTNKPTRACSAGGGGGGGGGGGDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRTTAASGNTVVGAAPVQTDQYGHHNSGYNNYHAATGNNNNNGTPWAHHHSTQRVPCNYPANEIRFMDDYGSGVANNGESDGAHGGVPFLSWRLNVADRASLVHDFTR*