Information report for 462918999
Gene Details
Functional Annotation
- Refseq: XP_002446663.1 — protein FAR1-RELATED SEQUENCE 6
- TrEMBL: C5YAF7 — C5YAF7_SORBI; Uncharacterized protein
- STRING: Sb06g020040.1 — (Sorghum bicolor)
Family Introduction
- We show that Arabidopsis FHY3 and FAR1, which encode two proteins related to Mutator-like transposases, act together to modulate phyA signaling by directly activating the transcription of FHY1 and FHL, whose products are essential for light-induced phyA nuclear accumulation and subsequent light responses. FHY3 and FAR1 have separable DNA binding and transcriptional activation domains that are highly conserved in Mutator-like transposases. Further, expression of FHY3 and FAR1 is negatively regulated by phyA signaling. We propose that FHY3 and FAR1 represent transcription factors that have been co-opted from an ancient Mutator-like transposase(s) to modulate phyA-signaling homeostasis in higher plants.
- We next used a yeast one-hybrid assay to delineate the DNA sequences to which FHY3 and FAR1 bind. GAD-FHY3 or GAD-FAR1 fusion proteins (GAD, GAL4 transcriptional activation domain), but not GAD alone, activated the LacZ reporter genes driven by the FHY1 and FHL promoters. Deletion analysis narrowed down the FHY3/FAR1 binding site to a 39-bp promoter subfragment located on the ‘a’ fragment for both FHY1 and FHL. Notably, these subfragments share a stretch of consensus sequence, 5’-TTCACGCGCC-3’. Mutating the core sequence ‘CACGCGC’ of this motif (m2 and m3 for FHY1, m5 for FHL) abolished the reporter gene activation by both GAD-FHY3 and GAD-FAR1. Mutating the flanking sequences (m1 and m4) did not obviously affect the reporter gene activation by GAD-FAR1, but clearly reduced activation by GAD-FHY3. Thus, ‘CACGCGC’ likely defines a cis-element that confers specific binding for FHY3 and FAR1 and is named FBS for FHY3-FAR1 binding site.
Literature and News
Homologs
- Brachypodium distachyon: Bradi5g13370.1.p
- Hordeum vulgare: MLOC_37569.1
- Panicum virgatum: Pavir.7NG234400.1.p, Pavir.7KG204700.1.p
- Setaria italica: Seita.7G136700.2.p, Seita.7G136700.1.p
- Setaria viridis: Sevir.7G145100.1.p
- Triticum aestivum: Traes_2BL_84018B863.1, Traes_2DL_6649188E4.1, Traes_2AL_05ADB552E.2
Sequences
CDS Sequence:
- >462918999|Eragrostis_tef|FAR1|462918999
GACCTGGCGCAGCGCGGCCGCGGCCAGCTCCCGCCGCCGCCCTCCCCCTCGTTCTGGAGCCTCCCTCCCCCTCCCTCTTTCCAGCGCAGCGTGGTGGTGTCGACGATCGAGGAGGCGGAGGCGGCAGCCATCGCGAGCGCGACGAGGAGGAGGCGGCCCGCTCGACAAGGAGGCAGCGGTCCGCGCGAGCGCGACGAGAAGGCTGCGGCTGCATGCGGCGGCAACGGCGGCGCGCTGCGTTTCCGATTTGGACTTCCCGGTTGGAGCGGAGACCGACGCCAGGGAGAGAGGGAGGCGACCCGCCGGCGGCGAGCATCAGGAGGCAACGTCGCAGGCTCCGCCCCGCCCCTAGGCCGCATCCACTCGCTCTTCCTGGACAGCCCACCCGCCCACCGCTTTGCAGTCCACTGCCGCCTCCGCTGCTCCGTCGGCCCAGTGGAGTGGAGTGGAGATCCGCCCGGATATGAATTGATTCATTCTATCGATTCGGAACCGAATGCTGATCTGATGGACACCCTTCATAGTGATCCTTATTCCAGAGGCAGCAGCTCGCAACTACAATTTAGGGATGTGTCAATGTCCACCGAGAACAGCAACACAGTTTTGGACAAGCATGAGATTGTCAACCCTCGAGTTGGCATGACGTTTGAGACAGTTGATTTGGCATACCAGTTCTACCTAGAGTATGGCTACCGTGCAGGCTTCGGGGTCTCAAAGAGGACATCCCACAGTGTTGACGGGGTCAAATACCGTGCTACATTTGTTTGTTACAAAGGTGGCATTGCTAGGATTAAGCCTGGCCTCAAAGCTCGAAGGAGGCTCGTTGCGAAGACTGGTTGCAAAGCAATGATGGTAGTGAAGTTTAACTCTAGTGAGAACCATTGGGAAGTGGTGTTCGTTGAGCTGGAGCATAACCACCCATGCAATCCTGAGATGGTCAGATTCATGATGTGCTTTAAAGATCTTCCTGACTGGCAAAGGGAGCATCGCCCATTCAATGCCAAAACTAGATTGAACCCGAAGATTCACTCCGATAAAGTGGATGATCTCTACAAGCATGGTCACCAGTACTTTGCTGACATTGTGGAAATGGGAGCTACTGATCCTGATGCGATGGAGTATGTCCTATCTGTGATGAAAGAAGCTAAAGAGAAAGTACGCAAGTTTGAGGAATCTCGAAAAGAGAAAAGGCCTGGAGAGAGTCCAGTTTCTACTAGCAAAAAGGGTGCTAAGTCGAAGCTGGCCGAAGACGGTAATGGGACATCAGTTTCAACACCTATGCCTGCAGCAGTTGCTACACTCACGATGGCTTCACCAGCACAAATGGCCACAGCACCGACAATGATGGCTATGGCACCTTCATCGGCAGCTGTTCCTCCAGGAATGTTTCTAGTACCAATGCACCCGCATTCCATGGTCTTCCCACCTTTTGCTCCTGCTGTTCCACCAGCAGTAGCACCCCCAGCCCCACCTGCTGCACCAGCAACCAATGTGGTGGATGCCCCTTCGAACTCCTCGAAGAAGCGAAAGAAAAGAAAGGGGAAT
Protein Sequence:
- >462918999|Eragrostis_tef|FAR1|462918999
DLAQRGRGQLPPPPSPSFWSLPPPPSFQRSVVVSTIEEAEAAAIASATRRRRPARQGGSGPRERDEKAAAACGGNGGALRFRFGLPGWSGDRRQGEREATRRRRASGGNVAGSAPPLGRIHSLFLDSPPAHRFAVHCRLRCSVGPVEWSGDPPGYELIHSIDSEPNADLMDTLHSDPYSRGSSSQLQFRDVSMSTENSNTVLDKHEIVNPRVGMTFETVDLAYQFYLEYGYRAGFGVSKRTSHSVDGVKYRATFVCYKGGIARIKPGLKARRRLVAKTGCKAMMVVKFNSSENHWEVVFVELEHNHPCNPEMVRFMMCFKDLPDWQREHRPFNAKTRLNPKIHSDKVDDLYKHGHQYFADIVEMGATDPDAMEYVLSVMKEAKEKVRKFEESRKEKRPGESPVSTSKKGAKSKLAEDGNGTSVSTPMPAAVATLTMASPAQMATAPTMMAMAPSSAAVPPGMFLVPMHPHSMVFPPFAPAVPPAVAPPAPPAAPATNVVDAPSNSSKKRKKRKGN