Gene Details:
- Gene ID: Pavir.3NG108400.1.p
- Gene Family: CPP Family
- Description: CPP Family protein
- Species: Panicum virgatum
- Source: CPP family gene from PlantTFDB
Protein Features:
Annotation Proteins:
- Refseq: XP_025815945.1 — pentatricopeptide repeat-containing protein At2g33760
- Swissprot: P93011 — PP182_ARATH; Pentatricopeptide repeat-containing protein At2g33760
- TrEMBL: A0A2S3HRR8 — A0A2S3HRR8_9POAL; Uncharacterized protein
- TrEMBL: A0A2T7DGG0 — A0A2T7DGG0_9POAL; Uncharacterized protein
- STRING: Pavir.J37430.1.p — (Panicum virgatum)
Gene Ontology:
- GO:0005515 — Molecular Function — protein binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction:
- CPP-like (cystein-rich polycomb-like protein) proteins are members of a small transcription factor family whose typical feature is the existence of one or two similar Cys-rich domains termed the CXC domain. The members of this family are widely present in plants and animals but absent in yeast, and the CXC domains of CPP-like proteins show high conservation across species from amoebae though plants to mammals (Andersen et al. 2007; Riechmann et al. 2000). CPP-like genes play an important role in development of reproductive tissue and control of cell division in plants.
Literature:
- Molecular evolution of the CPP-like gene family in plants: insights from comparative genomics of Arabidopsis and rice. DOI: 10.1007/s00239-008-9143-z ; PMID: 18696028
Sequences:
CDS Sequence:
- >Pavir.3NG108400.1.p|Panicum_virgatum|CPP|Pavir.3NG108400.1.p
ATGCAGCTGTTCAAGGAAGACCCACGGGATGACAAAAGGAAGTCTCACTGTGAAGGAGAGAAGGATGGCTCGGCAGAAAAGAAGAAACAGATCTTCATGCTTCTGAAGAGTCACCAAAACCACGGTCAAGACTCTATGAAGGGAACGATCACTCCCACGAAGAAAAAGTGCTGTAACTGCAGGAACTCTAGATGTTTGAAGTTGTACTGTGAATGCTTTGCGCGCTCGTGGGATTTCAAGGCCAAGTGGTGCATTGGATTCCCCATCTCTCGGAGACTCCGATCCCCTCCATCTTCCCAATTCGAGCCCTCCAGTTTCAGTATGAACCTCCACCACCGTCGCTCGCCGGAGTACAATGCCCTCCTCCTTGCCGGTCCGCGCCTCGGCCCTTTAAAGCAAGCCCACGCGCGCCTCGTCGTCGCCGGCCACGGGAGCTCCCTGCCCCTCACCACAAAGCTGGCCACCCTCGCAGTCACGGCTGGCGCCGCCTCCTATGCCCACCTCCTCGCCGCCACCCACCCCGCACCGGACTCCTTCCTCTTCTGCACCCTCACGCGTGCCGCTGCGCACCGCGGTCTCCCCGCTGCTGCTCTCACCTTCTACCGCAGCCTCCTCACCGCTGCCCTGCCCTTCTCCAGCTTCGCCTTCACCGCAGTTGCCAAGGCATGCGCCGATCTGTCTACGCTCCGCGTCGGCATGGCCGTCCACGCTCACGCCATCCTCCTCGGGTTTGGCTCCGATCAGTTCGTGCAGACGGCGCTTGTTGTGCTGTACTCCAAGTGCGGCCAACTGGCCGTTGCACGCAAGCTGTTCGATGCAATTCGTGACAGAAGCGTGGTCGCTTGGAACGCTATGATTTCTGGGTATGAGCAGAACGGTCTTGCTGAGCGGGCAATTGAGGTGTACAAGGAGATGCAGATGGCTGGGGAGGCGCCTGATTCTGCGACATTTGTAGCCACGCTATCTGCTTGTGCAAAGGGTTGTGCTCTGGACTTGGGACGTGAAGTGGAGAGACGCATTGTTTCTGAAAGGATGGACATGAGTGTGTTTCTTGGTGCCGCCCTTGTGAACATGTATGTAAGGTGTGGGCTTGTGAACAAGGCTCGTGAGTGGTTTGACAAGCTTCAGGAACGAAATGTGGTTACATGGACTTCCATGATCGCAGGATATGGCATGCACGGACATGGCCATGAGGCGATCAAACTATTCCATCTCATGAGGTGCGAAGGGCCACCACCCAACGATGTCACTTTTGTTGCAGTCCTATCTGCTTGTGCGCATGCTGGGTTGGTTAGTGAGGGGCGTGATGCCTTTGCTACAATGAAGAGTGTCTATGGATTGGTCCCTCGTGCTGAGCACTATTGTTCTATGGTTGATATGTATGGAAGGGCAGGACTTCTTGATGATGCCATGCAATTTATACACGACTCTATACCTGGAGAACCCGGACCTGAAGTTTGGACAGCTATACTTGGTGCATGTAAGATGCACAAGAATTTCAACCTTGGAGTGGAGGTGGCTGAGCGACTGATTGCCCTTGAGCCTGAGAATCCATCTCATCGTGTGCTGCTTTCTAACATTTATGCTTTATCTGGTAAAATGAACCATGTTGAGAAGGTAAGGAATACCATGATCAAGAGAAGATTGAAGAAGCAAATAGGTTACAGCTTGATTGAGATTGGGGGTATTGCCCATTTGTTTCGCATGGGTGAGAAGTCTCATCCGCAAACTCGAGATATTTACCAATATTTGGAGGAACTAATCCATAGGATTACTGATGCTGGCTATGTGCCTGAAACTGACTCGGTGCTGCATGAATTGGAAAAAGAGGAAAGGGAGTTTGCACTAAGATATCACGGTGAAAAACTGGCTGTATCCTTTGGACTCATGATGAGCGCTGGGAGCACAGCTCCAATCAGGATAATAAAAAACCTGCGGATATGCGGGGATTGCCATCTAGCTATCAAATATATGTCAGTTGTGGAGAATCGAGAGATAATTGTCAGAGATAAGCATCGGTTTCATCATTTCAAAGATGGAAAGTGTTCTTGTCAGGAATATTGGTGA
Protein Sequence:
- >Pavir.3NG108400.1.p|Panicum_virgatum|CPP|Pavir.3NG108400.1.p
MQLFKEDPRDDKRKSHCEGEKDGSAEKKKQIFMLLKSHQNHGQDSMKGTITPTKKKCCNCRNSRCLKLYCECFARSWDFKAKWCIGFPISRRLRSPPSSQFEPSSFSMNLHHRRSPEYNALLLAGPRLGPLKQAHARLVVAGHGSSLPLTTKLATLAVTAGAASYAHLLAATHPAPDSFLFCTLTRAAAHRGLPAAALTFYRSLLTAALPFSSFAFTAVAKACADLSTLRVGMAVHAHAILLGFGSDQFVQTALVVLYSKCGQLAVARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVYKEMQMAGEAPDSATFVATLSACAKGCALDLGREVERRIVSERMDMSVFLGAALVNMYVRCGLVNKAREWFDKLQERNVVTWTSMIAGYGMHGHGHEAIKLFHLMRCEGPPPNDVTFVAVLSACAHAGLVSEGRDAFATMKSVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFIHDSIPGEPGPEVWTAILGACKMHKNFNLGVEVAERLIALEPENPSHRVLLSNIYALSGKMNHVEKVRNTMIKRRLKKQIGYSLIEIGGIAHLFRMGEKSHPQTRDIYQYLEELIHRITDAGYVPETDSVLHELEKEEREFALRYHGEKLAVSFGLMMSAGSTAPIRIIKNLRICGDCHLAIKYMSVVENREIIVRDKHRFHHFKDGKCSCQEYW*