Gene Details:

  • Gene ID: LOC_Os06g19444.1
  • Gene Name: LOC4340812, Os06g0298200, OSNPB_060298200
  • Gene Family: CO-like Family
  • Description: CO-like Family protein
  • Species: Oryza sativa subsp. japonica
  • Source: CO-like family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_015644311.1  — zinc finger protein CONSTANS-LIKE 9 isoform X1
  • Swissprot:  Q9SSE5  — COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
  • TrEMBL:  A0A0D3GFM3  — A0A0D3GFM3_9ORYZ; Uncharacterized protein
  • TrEMBL:  A0A0E0A8H7  — A0A0E0A8H7_9ORYZ; Uncharacterized protein
  • TrEMBL:  A0A0E0HPB0  — A0A0E0HPB0_ORYNI; Uncharacterized protein
  • TrEMBL:  A0A0E0PWP3  — A0A0E0PWP3_ORYRU; Uncharacterized protein
  • TrEMBL:  B7EN35  — B7EN35_ORYSJ; Os06g0298200 protein
  • STRING:  OGLUM06G12660.2  — (Oryza glumipatula)
  • STRING:  ORUFI06G12310.2  — (Oryza rufipogon)
  • STRING:  OS06T0298200-01  — (Oryza sativa)
  • STRING:  ONIVA06G13380.1  — (Oryza nivara)
  • STRING:  OBART06G11710.1  — (Oryza barthii)

Gene Ontology:

  • GO:0007623  — Biological Process — circadian rhythm
  • GO:0048579  — Biological Process — negative regulation of long-day photoperiodism, flowering
  • GO:0005634  — Cellular Component — nucleus
  • GO:0005515  — Molecular Function — protein binding
  • GO:0008270  — Molecular Function — zinc ion binding

Family Introduction:

  • CO(CONSTANS) gene acts between the circadian clock and genes controlling meristem identity.In Arabidopsis, CO transcription factors defined by two conserved domains. The first is a zinc finger region near the amino terminus that resembles B-boxes, which regulate protein-protein interactions in several animal transcription factors. The second is a region of 43 amino acids near the carboxy terminus termed the CCT (CO, CO-like, TOC1) domain. Studies using green fluorescent protein fusions show that the CCT domain is involved in nuclear localization of the CO protein but must have an additional role because the late-flowering co-7 mutant, which has an altered CCT domain, correctly localizes the protein.

Literature:

Sequences:

CDS Sequence:
  • >LOC_Os06g19444.1|Oryza_sativa_subsp._japonica|CO-like|LOC_Os06g19444.1
    ATGGGCGCTCTTTGTGATTTCTGCGGGGAGCAGAGGTCTATGGTTTATTGCCGATCAGATGCAGCATCCTTGTGCTTATCGTGTGACCGTAATGTGCATTCAGCTAATGCTCTTTCTCGGCGCCATACAAGGACACTTCTGTGTGATAGATGTGCTTCACAGCCTGCCATGGTCCGCTGCCTTGTAGAAAATGCCTCGCTTTGCCAAAATTGTGATTGGAATGGGCATAGTGCTGGGTCTTCAGCTGCTGGTCATAAGAGGCAGACCATAAACTGCTACTCAGGGTGCCCATCATCTTCAGAACTTTCAAAAATCTGGACATTTGTTTCGGATATTCCTAATGTAGCTCCTGAGCCGAATTGCGAGCAAGGGATAAGCATGATGAGCATCAGCGACAGTGGTGTCAGTAATCAAGACAATGCTGCAGGGGACAGCAGTTTGTTAGATATTGCTAGTGCAACCCTTATGAGTGATCTTGGCACTGCTGGCAAGCCAAAGTCTTTGATAGGCTCCTCATCTGAAGCTGGCGTGAACCTTCTTCCACTTGCTACTGATCAGATGGCTGGATCCGTGGATTCGACATCAGCTAAGGTGCCCTATACGGCAGACCAAGATATGTTCAGCAAAGACAGTATATATGAAGATTTCTGTGTGGACGATGTTGATCTTAGTTTCGAAAATTATGAGGAACTATTTGGCACCTCCCATATTCAAACAGAGCAACTGTTTGATGATGCTGGGATCGACAGTTACTTTGAATCGAAGGAAATACCTTCTGGAAACTCTGATGAGCAGCCCAAGCTGATGCAGCCAGTGACCAGCAATGCAGTATCTGCTGATTCAGGGATGTCGATCCCAGGAGCCAAAGGTGATTCCAGTCTTTGTATACCTGTGAGGCAAGCTAGGTCCAGTATCTCTCTTTCATTTTCTGGTTTGACTGGTGAGAGCAGTGCTGGAGATTACCAAGATTGTGGGGTATCACCAGTGCTCCTTATGGGTGAGCCTCCTTGGCATCCTCCTGGCCCTGAGGGGTCATTTGCTGGAGCTACCAGAGACGATGCTATCACACGATACAAGGAGAAGAAGAAGAGAAGAAAATTTGACAAGAAAATCAGGTATGCATCTCGCAAGGCTAGGGCAGATGTGAGAAAAAGAGTCAAGGGCCGGTTTGTTAAGGCTGGTGAAGCATACGACTACGATCCACTCTGTGAAACGAGGAGCTACTGA
Protein Sequence:
  • >LOC_Os06g19444.1|Oryza_sativa_subsp._japonica|CO-like|LOC_Os06g19444.1
    MGALCDFCGEQRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLLCDRCASQPAMVRCLVENASLCQNCDWNGHSAGSSAAGHKRQTINCYSGCPSSSELSKIWTFVSDIPNVAPEPNCEQGISMMSISDSGVSNQDNAAGDSSLLDIASATLMSDLGTAGKPKSLIGSSSEAGVNLLPLATDQMAGSVDSTSAKVPYTADQDMFSKDSIYEDFCVDDVDLSFENYEELFGTSHIQTEQLFDDAGIDSYFESKEIPSGNSDEQPKLMQPVTSNAVSADSGMSIPGAKGDSSLCIPVRQARSSISLSFSGLTGESSAGDYQDCGVSPVLLMGEPPWHPPGPEGSFAGATRDDAITRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAGEAYDYDPLCETRSY*