Gene Details:

  • Gene ID: LOC_Os06g16370.1
  • Gene Name: HD1, LOC4340746, Os06g0275000, P0038C05.23, P0676F10.34, SE1
  • Gene Family: CO-like Family
  • Description: CO-like Family protein
  • Species: Oryza sativa subsp. japonica
  • Source: CO-like family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_015641799.1  — zinc finger protein HD1
  • Swissprot:  Q9FDX8  — HD1_ORYSJ; Zinc finger protein HD1
  • TrEMBL:  D1MWS6  — D1MWS6_ORYSA; Heading date1
  • TrEMBL:  G3LIY5  — G3LIY5_9ORYZ; Heading day 1
  • TrEMBL:  I3RVE5  — I3RVE5_ORYSJ; Hd1 (Fragment)
  • STRING:  OS06T0275000-01  — (Oryza sativa)

Gene Ontology:

  • GO:0009658  — Biological Process — chloroplast organization
  • GO:0009909  — Biological Process — regulation of flower development
  • GO:0030154  — Biological Process — cell differentiation
  • GO:0045892  — Biological Process — negative regulation of transcription, DNA-templated
  • GO:0048576  — Biological Process — positive regulation of short-day photoperiodism, flowering
  • GO:0048579  — Biological Process — negative regulation of long-day photoperiodism, flowering
  • GO:0005634  — Cellular Component — nucleus
  • GO:0003677  — Molecular Function — DNA binding
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding
  • GO:0005515  — Molecular Function — protein binding
  • GO:0008270  — Molecular Function — zinc ion binding

Family Introduction:

  • CO(CONSTANS) gene acts between the circadian clock and genes controlling meristem identity.In Arabidopsis, CO transcription factors defined by two conserved domains. The first is a zinc finger region near the amino terminus that resembles B-boxes, which regulate protein-protein interactions in several animal transcription factors. The second is a region of 43 amino acids near the carboxy terminus termed the CCT (CO, CO-like, TOC1) domain. Studies using green fluorescent protein fusions show that the CCT domain is involved in nuclear localization of the CO protein but must have an additional role because the late-flowering co-7 mutant, which has an altered CCT domain, correctly localizes the protein.

Literature:

Sequences:

CDS Sequence:
  • >LOC_Os06g16370.1|Oryza_sativa_subsp._japonica|CO-like|LOC_Os06g16370.1
    ATGAATTATAATTTTGGTGGCAACGTGTTCGACCAGGAGGTTGGAGTTGGAGGCGAAGGAGGAGGAGGAGGAGAGGGGAGCGGCTGCCCATGGGCGCGGCCGTGCGACGGGTGCCGCGCGGCGCCGAGCGTGGTGTACTGCCGCGCGGACGCGGCGTACCTGTGCGCGTCGTGCGACGCGCGGGTGCACGCGGCCAACCGCGTGGCGTCCCGCCACGAGCGCGTGCGGGTGTGCGAGGCCTGCGAGCGCGCCCCGGCCGCGCTCGCGTGCCGCGCCGACGCCGCCGCGCTGTGCGTGGCGTGCGACGTGCAGGTGCACTCCGCGAACCCGCTCCCGGCCATCACCATCCCGGCCACCTCCGTCCTCGCTGAGGCGGTGGTGGCCACCGCCACCGTCCTCGGCGACAAGGACGAGGAGGTGGACTCTTGGCTTCTCCTCTCCAAAGATTCCGACAACAACAACAACAATAACAACAACAACGACAACGACAATAACGACAACAACAACAGCAACAGCAGCAACAACGGCATGTATTTTGGTGAAGTCGATGAGTACTTTGATCTTGTCGGGTACAATTCGTACTACGACAACCGCATCGAAAACAACCAAGATCGGCAGTATGGGATGCATGAACAGCAAGAGCAGCAGCAGCAGCAGCAGGAGATGCAAAAGGAGTTTGCAGAGAAGGAAGGGAGCGAGTGTGTGGTACCTTCACAGATCACAATGCTGAGTGAGCAGCAGCATAGTGGTTATGGAGTTGTGGGAGCAGACCAGGCCGCCTCCATGACCGCCGGCGTCAGTGCTTACACAGATTCCATCAGCAACAGCATATCTTTCTCATCAATGGAGGCGGGTATAGTACCAGACAGCACGGTGATAGATATGCCAAATTCCAGAATCCTGACACCTGCTGGAGCAATCAATCTCTTCTCAGGTCCCTCGCTTCAGATGTCCCTTCACTTCAGCTCCATGGACAGGGAGGCCAGGGTGCTCAGGTACAGGGAGAAGAAGAAGGCCAGGAAGTTTGAGAAGACAATACGTTATGAAACAAGAAAGGCGTATGCAGAGGCACGACCCCGGATCAAGGGCCGTTTCGCCAAGAGATCAGATGTGCAGATCGAAGTGGACCAGATGTTCTCCACTGCAGCTCTATCTGACGGTAGCTATGGTACTGTTCCATGGTTCTGA
Protein Sequence:
  • >LOC_Os06g16370.1|Oryza_sativa_subsp._japonica|CO-like|LOC_Os06g16370.1
    MNYNFGGNVFDQEVGVGGEGGGGGEGSGCPWARPCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALACRADAAALCVACDVQVHSANPLPAITIPATSVLAEAVVATATVLGDKDEEVDSWLLLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNGMYFGEVDEYFDLVGYNSYYDNRIENNQDRQYGMHEQQEQQQQQQEMQKEFAEKEGSECVVPSQITMLSEQQHSGYGVVGADQAASMTAGVSAYTDSISNSISFSSMEAGIVPDSTVIDMPNSRILTPAGAINLFSGPSLQMSLHFSSMDREARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKRSDVQIEVDQMFSTAALSDGSYGTVPWF*